PKBDS0823AWQO

Measurement set of scRNA-seq for islet biosample of human donor HPAP-032 from HPAP with no_treatment (HPAP-032)

experimental data

scRNA-seq

released

single-cell RNA sequencing assay (scRNA-seq)

Homo sapiens

PKBDS6276JJRU

experimental data

scRNA-seq

polyA enriched

released

single-cell RNA sequencing assay (scRNA-seq)

Homo sapiens

PKBDS6113LMCM

experimental data

/platform-terms/EFO_0008563/, /platform-terms/EFO_0008637/

snATAC-seq

https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=5

accessible DNA

released

single-cell ATAC-seq (snATAC-seq)

Homo sapiens

PKBDS6293ZIMN

experimental data

scRNA-seq

https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=4

polyA enriched

released

single-cell RNA sequencing assay (scRNA-seq)

Homo sapiens

PKBDS4978GIWI

experimental data

scRNA-seq

https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=4

polyA enriched

released

single-cell RNA sequencing assay (scRNA-seq)

Homo sapiens

PKBDS6581ITMO

experimental data

scRNA-seq

polyA enriched

released

single-cell RNA sequencing assay (scRNA-seq)

Homo sapiens

PKBDS0559PSWD

Analysis set of scRNA-seq for islet biosample of human donor HP-23135-01 from Prodo with 6hr_IL-1b+IFN-g (HP-23135-01__6hr_IL-1b+IFN-g)

intermediate analysis

released

intermediate analysis of scRNA-seq data

Homo sapiens

PKBDS6660RQXA

Measurement set of scRNA-seq for islet biosample of human donor HPAP-111 from HPAP with no_treatment (HPAP-111)

experimental data

scRNA-seq

released

single-cell RNA sequencing assay (scRNA-seq)

Homo sapiens

PKBDS5349QTDM

intermediate analysis

released

intermediate analysis of snATAC-seq data

Homo sapiens

PKBDS0206SBJF

Peak counts for pancreatic ductal cells from snATAC-seq

principal analysis

released

principal analysis of snATAC-seq data

PKBDS5167CEXF

experimental data

snATAC-seq

https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=5

accessible DNA

released

single-cell ATAC-seq (snATAC-seq)

Homo sapiens

PKBDS6441SUFH

Gene expression counts for pancreatic MUC5b ductal cells from scRNA-seq

principal analysis

released

principal analysis of scRNA-seq data

PKBDS7467MJUF

Analysis set of RNA-seq for pancreatic beta cell of islet biosample from human donor SAMN19776478 in the HPAP database HPAP-047

intermediate analysis

released

intermediate analysis of RNA-seq data

Homo sapiens

PKBDS0086MJHU

Differential expression results testing association with BMI in pancreatic active stellate cells

principal analysis

released

principal analysis of data

PKBDS7423RRHO

Measurement set of scRNA-seq for islet biosample of human donor HP-21077-01 from Prodo with EtOH (HP-21077-01__EtOH)

experimental data

scRNA-seq

released

single-cell RNA sequencing assay (scRNA-seq)

Homo sapiens

PKBDS0310UCQN

Measurement set of EndoC-bH2 cells treated with normoglycemia from GSE212749

experimental data

RNA-seq

rRNA depleted

released

bulk RNA-seq assay (RNA-seq)

Homo sapiens

PKBDS7588NPFJ

Analysis set of RNA-seq for pancreatic exocrine cell of islet biosample from human donor SAMN19842595 in the HPAP database HPAP-066

intermediate analysis

released

intermediate analysis of RNA-seq data

Homo sapiens

PKBDS3841GMJL

Analysis set of EndoC-bH3 cells treated with HNF1A sgRNA and CRISPR-Cas9 RNPs from GSE277551

intermediate analysis

released

intermediate analysis of RNA-seq data

Homo sapiens

PKBDS6074TCZC

Measurement set of scRNA-seq for islet biosample of human donor SAMN11417921 from Prodo with DMSO (SRR17168076)

experimental data

scRNA-seq

released

single-cell RNA sequencing assay (scRNA-seq)

Homo sapiens

PKBDS3964MMBB

Analysis set of scRNA-seq for islet biosample of human donor HP-21337-01 from Prodo with 6hr_IL-1b (HP-21337-01__6hr_IL-1b)

intermediate analysis

released

intermediate analysis of scRNA-seq data

Homo sapiens

PKBDS8682VUMC

Analysis set of EndoC-bH1 cells treated with IFNa for 24hr from GSE133218

intermediate analysis

released

intermediate analysis of RNA-seq data

Homo sapiens

PKBDS4712MFGY

experimental data

snATAC-seq

https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=5

accessible DNA

released

single-cell ATAC-seq (snATAC-seq)

Homo sapiens

PKBDS1413YNPJ

Genes in biological pathways in REACTOME database

genes

released

Homo sapiens genes

Homo sapiens

PKBDS9675WRHO

Analysis set of scRNA-seq for islet biosample of human donor HPAP-019 from HPAP with no_treatment (HPAP-019)

intermediate analysis

released

intermediate analysis of scRNA-seq data

Homo sapiens

PKBDS0465XZRX

intermediate analysis

released

intermediate analysis of snATAC-seq data

Homo sapiens