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FileSet
File Set
Provenance
Quality
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File Set Type
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None
experimental data
1333
intermediate analysis
1145
principal analysis
420
resource analysis
8
genes
5
transcriptome
4
variants
4
genome
1
Taxa
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Homo sapiens
2482
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117
ID
Accession
Assay Term
Assay Titles
Auxiliary Sets
Base Media
Controls
Data URL
Donor Validation Methods
Donors
External Image URL
File Set Type
Fraction Collection Time (min)
Hormone Assays
Input File Sets
Islet Cell Volume for Functional Assay (IEQ)
Islet Endocrine Cell Composition (%)
Islet Purification for Functional Assay
Islet Purity for Functional Assay (%)
Islet Size/Diameter (μm)
Library Construction Platform
Multiome Size
Normalized Islet Glucagon Content
Normalized Islet Glucagon Secretion Units
Normalized Islet Insulin Content
Normalized Islet Insulin Secretion Units
Perifusion Flow Rate
Perifusion Fraction Volume
Perifusion Protocol
Preferred Assay Title
Protocols
Related Multiome Datasets
Samples
Sequencing Chemistry
Sequencing Library Types
Status
Stimuli or Secretagogues
Targeted Genes
Total Islet Cell Volume (IEQ)
Total Islet DNA Content
Total Islet Glucagon Content
Total Islet Insulin Content
Total Number of Islets for Functional Assay
Were the Islets Shipped?
/analysis-sets/PKBDS9987CZYJ/
PKBDS9987CZYJ
an analyte assay that measures the abundance of a hormone
/human-donors/PKBDO7691YWQE/
intermediate analysis
/measurement-sets/PKBDS9220VSGW/
pg/100 IEQs/min;%content/min
ng/100 IEQs/min;%content/min
/primary-islet/PKBSM0542JBBR/
released
261.13
140642.45 pg
2356.13 ng
/measurement-sets/PKBDS0823AWQO/
PKBDS0823AWQO
/assay-terms/OBI_0002631/
/human-donors/PKBDO4069UFSJ/
experimental data
scRNA-seq
/primary-islet/PKBSM4984ZBLV/
v2
released
/measurement-sets/PKBDS6276JJRU/
PKBDS6276JJRU
/assay-terms/OBI_0002631/
/human-donors/PKBDO0189DPPC/
experimental data
scRNA-seq
/primary-islet/PKBSM1887MBQF/
polyA enriched
released
/measurement-sets/PKBDS6113LMCM/
PKBDS6113LMCM
/assay-terms/OBI_0002764/
/human-donors/PKBDO5844FAXW/
experimental data
/platform-terms/EFO_0008563/
,
/platform-terms/EFO_0008637/
snATAC-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=5
/primary-islet/PKBSM5730EGRX/
accessible DNA
released
/measurement-sets/PKBDS6293ZIMN/
PKBDS6293ZIMN
/assay-terms/OBI_0002631/
/human-donors/PKBDO1015YEQK/
experimental data
/platform-terms/EFO_0008637/
scRNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=4
/primary-islet/PKBSM4043YPPC/
polyA enriched
released
/measurement-sets/PKBDS0812QKGU/
PKBDS0812QKGU
/assay-terms/OBI_0003778/
5.6 mM
/human-donors/PKBDO1507ATGZ/
experimental data
3
Glucagon, Insulin
beta:61%;alpha:34%;delta:5%
Hand-picked
100
1
3
https://www.protocols.io/view/analysis-of-islet-function-in-dynamic-cell-perifus-eq2ly4nxrlx9/v1
/primary-islet/PKBSM0030ZHHH/
released
16.7 mM glucose;16.7 mM glucose + 100 μM IBMX;1.7mM glucose + 1 μM Epinephrine;5.6 mM glucose + 20 mM KCl
95
true
/measurement-sets/PKBDS3853UWGI/
PKBDS3853UWGI
/assay-terms/OBI_0003778/
5.6 mM
/human-donors/PKBDO7910PILN/
experimental data
3
Glucagon, Insulin
beta:39%;alpha:52%;delta:9%
Hand-picked
100
214.8
1
3
https://www.protocols.io/view/analysis-of-islet-function-in-dynamic-cell-perifus-eq2ly4nxrlx9/v1
/primary-islet/PKBSM1186RBKE/
released
16.7 mM glucose;16.7 mM glucose + 100 μM IBMX;1.7mM glucose + 1 μM Epinephrine;5.6 mM glucose + 20 mM KCl
107
true
/analysis-sets/PKBDS3636UTWP/
PKBDS3636UTWP
principal analysis
released
/measurement-sets/PKBDS4978GIWI/
PKBDS4978GIWI
/assay-terms/OBI_0002631/
/human-donors/PKBDO2480WRMR/
experimental data
/platform-terms/EFO_0008637/
scRNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=4
/primary-islet/PKBSM0525CBWM/
polyA enriched
released
/measurement-sets/PKBDS9123UPDF/
PKBDS9123UPDF
/assay-terms/OBI_0003090/
/human-donors/PKBDO5754ZYGQ/
experimental data
RNA-seq
/primary-islet/PKBSM8905WQGL/
rRNA depleted
released
/measurement-sets/PKBDS6581ITMO/
PKBDS6581ITMO
/assay-terms/OBI_0002631/
/human-donors/PKBDO5301GZBH/
experimental data
scRNA-seq
/primary-islet/PKBSM3825FNRZ/
polyA enriched
released
/analysis-sets/PKBDS5605ZDYG/
PKBDS5605ZDYG
RNA-seq
/human-donors/PKBDO0256NZGJ/
intermediate analysis
/measurement-sets/PKBDS8596WIUS/
/primary-islet/PKBSM6896AUNM/
released
/analysis-sets/PKBDS0559PSWD/
PKBDS0559PSWD
scRNA-seq
/human-donors/PKBDO3790TCBJ/
intermediate analysis
/measurement-sets/PKBDS2517EYFA/
/primary-islet/PKBSM8996XRUW/
released
/analysis-sets/PKBDS7064BSLI/
PKBDS7064BSLI
an analyte assay that measures the abundance of a hormone
/human-donors/PKBDO8721NNAS/
intermediate analysis
/measurement-sets/PKBDS8422VDLS/
pg/100 IEQs/min;%content/min
ng/100 IEQs/min;%content/min
/primary-islet/PKBSM6234CXPL/
released
227.05
116583.5 pg
2023.06 ng
/measurement-sets/PKBDS6660RQXA/
PKBDS6660RQXA
/assay-terms/OBI_0002631/
/human-donors/PKBDO0755OVBR/
experimental data
scRNA-seq
/primary-islet/PKBSM8339ZAIT/
v3
released
/analysis-sets/PKBDS5349QTDM/
PKBDS5349QTDM
snATAC-seq
/human-donors/PKBDO3039VAUN/
intermediate analysis
/measurement-sets/PKBDS7868YWYV/
/primary-islet/PKBSM1026HYOH/
released
/measurement-sets/PKBDS4009MXBJ/
PKBDS4009MXBJ
/assay-terms/OBI_0003778/
5.6 mM
/human-donors/PKBDO4908OEMJ/
experimental data
3
Glucagon, Insulin
beta:72%;alpha:17%;delta:12%
Hand-picked
100
203
1
3
https://www.protocols.io/view/analysis-of-islet-function-in-dynamic-cell-perifus-eq2ly4nxrlx9/v1
/primary-islet/PKBSM1056EWDO/
released
16.7 mM glucose;16.7 mM glucose + 100 μM IBMX;1.7mM glucose + 1 μM Epinephrine;5.6 mM glucose + 20 mM KCl
90
true
/analysis-sets/PKBDS0206SBJF/
PKBDS0206SBJF
[]
principal analysis
/analysis-sets/PKBDS0470WCHR/
released
/analysis-sets/PKBDS9097NVEW/
PKBDS9097NVEW
RNA-seq
/human-donors/PKBDO8293TLPA/
intermediate analysis
/measurement-sets/PKBDS5449XLCC/
/human-beta-cell-line/PKBSM8771SZOO/
released
/measurement-sets/PKBDS5167CEXF/
PKBDS5167CEXF
/assay-terms/OBI_0002764/
/human-donors/PKBDO1799FAHR/
experimental data
/platform-terms/EFO_0008637/
snATAC-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=5
/primary-islet/PKBSM2945ZOKM/
accessible DNA
released
/analysis-sets/PKBDS6441SUFH/
PKBDS6441SUFH
[]
principal analysis
/analysis-sets/PKBDS1349YHGQ/
released
/analysis-sets/PKBDS7467MJUF/
PKBDS7467MJUF
RNA-seq
/human-donors/PKBDO9321KUZZ/
intermediate analysis
/measurement-sets/PKBDS6219JVYX/
/primary-cells/PKBSM9712DFTL/
released
/analysis-sets/PKBDS6282GCSD/
PKBDS6282GCSD
RNA-seq
/human-donors/PKBDO2861YUDR/
intermediate analysis
/measurement-sets/PKBDS6358QWWV/
/primary-islet/PKBSM4571QBDG/
released
/analysis-sets/PKBDS9160ZARV/
PKBDS9160ZARV
principal analysis
released
/measurement-sets/PKBDS0078LVZB/
PKBDS0078LVZB
/assay-terms/OBI_0003090/
/human-donors/PKBDO6041QMNA/
experimental data
RNA-seq
/primary-islet/PKBSM2365KOHC/
rRNA depleted
released
Data Library