PKBDO9321KUZZ

released

PKBDO9321KUZZ

released
RRID RRID:SAMN19776478Program Donor ID SAMN19776478

Clinical summary

Diabetes status
Control Without Diabetes
Age (y)
8
Age group
0-12
BMI
16.82
Height (cm)
—
Weight (kg)
—
HbA1c %
—
C-Peptide (ng/ml)
1.24
Diabetes duration
—
AAB summary
none positive
AAB count
0

Demographics

Age (y)
8
Age group
0-12
Pediatric
Yes
Gender
Male
Genetic Sex
Male
Sex discordant
No
Ethnicity
White
Predicted genetic ancestry
European (91%), East-Asian (4%), Admixed-American (3%), African (2%)
Dominant genetic ancestry
European

Additional clinical

Diabetes (ontology)
No ontology term
T1D stage
No sufficient information to derive
Tier 1 complete
No
Family history of diabetes
TRUE
Family history relationship
Paternal_grandfather
Living donor
No
Cause of death
Cerebrovascular/Stroke
Donation type
Donation after brain death
Hospital stay (h)
111

Autoantibodies

Summary
none positive
Any positive
No
Tested
Yes
Positive count
0
GADANegative
0 unit/ml
IAANegative
-0.002 unit/ml
IA2Negative
0 unit/ml
ZNT8Negative
0.002 unit/ml

HLA typing

LocusAllele 1Allele 2Method
A03:0125:01NGS
A325RT-PCR
B08:0118:01NGS
B818RT-PCR
Bw400RT-PCR
Bw611RT-PCR
C0712RT-PCR
C07:0112:03NGS
DPA101:03—NGS
DPB102:0104:01NGS
DPB102:0104:01RT-PCR
DQA10104RT-PCR
DQA101:0204:01NGS
DQB104:0206:02NGS
DQB146RT-PCR
DR815RT-PCR
DR515151RT-PCR
DR5200RT-PCR
DR5300RT-PCR
DRB115:0108:01NGS
DRB3——NGS
DRB4——NGS
DRB501:01—NGS

Data available

Datasets
Genotyping, HLA_typing, RNAseq, scRNAseq, ATAC-seq, snATACseq, Function, Imaging, CyTof, WGBS, Histology, CODEX, imaging_mass_spec, TCRseq, BCRseq, Flow_cytometry
Tissues
unspecified, Islet, Pancreas, Spleen, Lymph, Peripheral_blood

Genetics

GenotypingAccess dataset
HLA_typingAccess dataset

Pancreas

imaging_mass_specAccess dataset

Spleen

Lymph

Flow_cytometryAccess dataset

Peripheral_blood

Flow_cytometryAccess dataset

Supplementary

HPAP
Identifiers
PANC-DB:HPAP-047
Pancreas tissue available
Yes
Publication data
Publication identifiers
PMID:31127054, PMID:36206763
Description
Human pancreas donor SAMN19776478 in the HPAP database
External resources
PANC-DB:HPAP-047

Attribution

HPAP collection
Data Library