released

PKBDO2480WRMR

released

RRID RRID:SAMN19776484Program Donor ID SAMN19776484

Clinical summary

Diabetes status

Control Without Diabetes

Age (y)

40

Age group

40-64

BMI

30.85

Height (cm)

—

Weight (kg)

—

HbA1c %

4.8

C-Peptide (ng/ml)

6.38

Diabetes duration

—

AAB summary

none positive

AAB count

0

Demographics

Age (y): 40
Age group: 40-64
Pediatric: No
Gender: Female
Genetic Sex: Female
Sex discordant: No
Ethnicity: White
Predicted genetic ancestry: European (97%), East-Asian (1%), African (1%), Admixed-American (1%)
Dominant genetic ancestry: European

Additional clinical

Diabetes (ontology): No ontology term
T1D stage: No sufficient information to derive
HbA1c-derived diabetes status: Normal
Label vs HbA1c discordant: No
Tier 1 complete: No
Family history of diabetes: TRUE
Living donor: No
Cause of death: Head Trauma
Donation type: Donation after brain death
Hospital stay (h): 35

Autoantibodies

Summary: none positive
Any positive: No
Tested: Yes
Positive count: 0

GADANegative

1 unit/ml

IAANegative

0.001 unit/ml

IA2Negative

0 unit/ml

ZNT8Negative

0.007 unit/ml

HLA typing

Status: X/X

Locus	Allele 1	Allele 2	Method
A	11	29	RT-PCR
B	38	44	RT-PCR
Bw4	1	1	RT-PCR
Bw6	0	0	RT-PCR
C	05	12	RT-PCR
DPB1	02:01	04:01	RT-PCR
DQA1	01	05	RT-PCR
DQB1	7	6	RT-PCR
DR	11	13	RT-PCR
DR51	0	0	RT-PCR
DR52	52	52	RT-PCR
DR53	0	0	RT-PCR

Data available

Datasets: Genotyping, HLA_typing, RNAseq, scRNAseq, ATAC-seq, snATACseq, Function, Imaging, CyTof, Histology, imaging_mass_spec
Tissues: unspecified, Islet, Pancreas, Spleen, Lymph

Genetics

GenotypingAccess dataset

HLA_typingAccess dataset

Islet

RNAseqAccess dataset

scRNAseqAccess dataset

ATAC-seqAccess dataset

snATACseqAccess dataset

FunctionAccess dataset

ImagingAccess dataset

CyTofAccess dataset

Pancreas

histologyAccess dataset

imaging_mass_specAccess dataset

Spleen

histologyAccess dataset

Lymph

histologyAccess dataset

Supplementary

HPAP

Identifiers

PANC-DB:HPAP-054

Pancreas tissue available: Yes
Other tissues: UBERON:0002048, UBERON:0002107, UBERON:0002113, UBERON:0001264

Publication data

Publication identifiers

PMID:31127054, PMID:36206763

Description

Human pancreas donor SAMN19776484 in the HPAP database

External resources

PANC-DB:HPAP-054

URL

https://hpap.pmacs.upenn.edu/explore/donor/donor-summary/HPAP-054

Attribution