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File Format
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bam
3
tsv
3
mtx
2
txt
2
fasta
1
gtf
1
h5ad
1
Content Type
All
None
QC metrics
3
sparse peak count matrix
3
alignments
2
element quantifications
2
genes_transcripts
1
genome reference
1
transcriptome alignments
1
25 Items
100 Items
300 Items
13 items
MatrixFile
PKBFI8472BRLB
mtx - cell by genomic position sparse peak count matrix
Pankbase Consortium, PanKbase
Content Summary
cell by genomic position sparse peak count matrix
File Set
intermediate analysis of snATAC-seq data
released
invalidated
MatrixFile
PKBFI2503EGQY
mtx - cell by genomic position sparse peak count matrix
Pankbase Consortium, PanKbase
Content Summary
cell by genomic position sparse peak count matrix
File Set
intermediate analysis of snATAC-seq data
released
invalidated
AlignmentFile
PKBFI3551GMNR
bam - filtered alignments - GRCh38
Klaus Kaestner, UPenn
Content Summary
filtered alignments
File Set
intermediate analysis of RNA-seq data
released
validated
AlignmentFile
PKBFI6949VUKM
bam - filtered transcriptome alignments - GENCODE 39
Klaus Kaestner, UPenn
Content Summary
filtered transcriptome alignments
File Set
intermediate analysis of RNA-seq data
released
validated
TabularFile
PKBFI7865ARND
tsv - element quantifications - GRCh38
Klaus Kaestner, UPenn
File Set
intermediate analysis of RNA-seq data
released
validated
TabularFile
PKBFI4344UDJJ
tsv - element quantifications - GRCh38
Klaus Kaestner, UPenn
File Set
intermediate analysis of RNA-seq data
released
validated
MatrixFile
PKBFI0784JPQV
h5ad - cell by genomic position sparse peak count matrix
Pankbase Consortium, PanKbase
Content Summary
cell by genomic position sparse peak count matrix
File Set
principal analysis of snATAC-seq data
released
validated
AlignmentFile
PKBFI0555SWYG
bam - filtered alignments - GRCh38
Klaus Kaestner, UPenn
Content Summary
filtered alignments
File Set
intermediate analysis of RNA-seq data
released
validated
TabularFile
PKBFI6971ASBI
txt - QC metrics - GRCh38
Klaus Kaestner, UPenn
File Set
intermediate analysis of RNA-seq data
released
validated
TabularFile
PKBFI2034TPLU
tsv - QC metrics - GRCh38
Klaus Kaestner, UPenn
File Set
intermediate analysis of RNA-seq data
released
validated
ReferenceFile
PKBFI6475GTLH
fasta - genome reference - GRCh38
Pankbase Consortium, PanKbase
File Set
intermediate analysis of RNA-seq data
released
validated
TabularFile
PKBFI6822EDSE
txt - QC metrics - GRCh38
Klaus Kaestner, UPenn
File Set
intermediate analysis of RNA-seq data
released
validated
ReferenceFile
PKBFI0723SUOK
gtf - genes_transcripts - GRCh38
Pankbase Consortium, PanKbase
File Set
intermediate analysis of RNA-seq data
released
validated