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File Format
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bam
3
tsv
3
mtx
2
txt
2
fasta
1
gtf
1
h5ad
1
Content Type
All
None
QC metrics
3
sparse peak count matrix
3
alignments
2
element quantifications
2
genes_transcripts
1
genome reference
1
transcriptome alignments
1
25 Items
100 Items
300 Items
13 items
ID
Accession
Alternate Accessions
Assembly
Content Summary
Content Type
File Format
File Set
Lab
Reference Files
Status
Transcriptome Annotation
Upload Status
UUID
/matrix-files/PKBFI8472BRLB/
PKBFI8472BRLB
cell by genomic position sparse peak count matrix
sparse peak count matrix
mtx
/analysis-sets/PKBDS2888EUGL/
/labs/pankbase-consortium/
/reference-files/PKBFI5924NPMC/
released
invalidated
fd52d853-e468-48d2-b6b7-0e243a3cde6f
/matrix-files/PKBFI2503EGQY/
PKBFI2503EGQY
cell by genomic position sparse peak count matrix
sparse peak count matrix
mtx
/analysis-sets/PKBDS3334GGSG/
/labs/pankbase-consortium/
/reference-files/PKBFI5924NPMC/
released
invalidated
fc6a456b-f294-41ca-b8c7-2b58d6ccec9d
/alignment-files/PKBFI3551GMNR/
PKBFI3551GMNR
GRCh38
filtered alignments
alignments
bam
/analysis-sets/PKBDS2571DYWB/
/labs/klaus-kaestner/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
e2e16b67-d4b0-4172-a50e-7ab356fb5e17
/alignment-files/PKBFI6949VUKM/
PKBFI6949VUKM
GENCODE 39
filtered transcriptome alignments
transcriptome alignments
bam
/analysis-sets/PKBDS2571DYWB/
/labs/klaus-kaestner/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
e2d9411a-4d53-4dbd-921e-e27a821a1ded
/tabular-files/PKBFI7865ARND/
PKBFI7865ARND
GRCh38
element quantifications
tsv
/analysis-sets/PKBDS2571DYWB/
/labs/klaus-kaestner/
released
validated
c8ff708b-633f-403e-b56b-1b950f2eeec8
/tabular-files/PKBFI4344UDJJ/
PKBFI4344UDJJ
GRCh38
element quantifications
tsv
/analysis-sets/PKBDS2571DYWB/
/labs/klaus-kaestner/
released
validated
907682f9-6660-44d9-ab59-1574552e66d5
/matrix-files/PKBFI0784JPQV/
PKBFI0784JPQV
cell by genomic position sparse peak count matrix
sparse peak count matrix
h5ad
/analysis-sets/PKBDS0470WCHR/
/labs/pankbase-consortium/
/reference-files/PKBFI5924NPMC/
released
validated
86bd05ad-0414-4642-8ced-4c0ebac71c95
/alignment-files/PKBFI0555SWYG/
PKBFI0555SWYG
GRCh38
filtered alignments
alignments
bam
/analysis-sets/PKBDS2571DYWB/
/labs/klaus-kaestner/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
7f95a7aa-fb95-4f06-8b07-d5a2112cfb05
/tabular-files/PKBFI6971ASBI/
PKBFI6971ASBI
GRCh38
QC metrics
txt
/analysis-sets/PKBDS2571DYWB/
/labs/klaus-kaestner/
released
validated
6243d028-4851-439e-be41-629e784de1d4
/tabular-files/PKBFI2034TPLU/
PKBFI2034TPLU
GRCh38
QC metrics
tsv
/analysis-sets/PKBDS2571DYWB/
/labs/klaus-kaestner/
released
validated
55c9f511-3594-4873-9f9b-c6ca1bd86db0
/reference-files/PKBFI6475GTLH/
PKBFI6475GTLH
GRCh38
genome reference
fasta
/analysis-sets/PKBDS2571DYWB/
/labs/pankbase-consortium/
released
validated
4266828b-a78c-4ba9-9445-afbeea2d472b
/tabular-files/PKBFI6822EDSE/
PKBFI6822EDSE
GRCh38
QC metrics
txt
/analysis-sets/PKBDS2571DYWB/
/labs/klaus-kaestner/
released
validated
36d844a1-b6a0-42a8-b378-29ca96def72b
/reference-files/PKBFI0723SUOK/
PKBFI0723SUOK
GRCh38
genes_transcripts
gtf
/analysis-sets/PKBDS2571DYWB/
/labs/pankbase-consortium/
released
validated
21e1e899-5750-4f9b-9ff4-d34e30dda713