Data Library Home
Data Library Schema
PanKgraph
Integrated Cell Browser
Data
Donor Summary
Data Library
APIs
Resources
Integrated Cell Browser
Differential Gene Expression Browser
Analytical Library
Metadata Standards
Tools | Pipelines
Publications
About
Project
People
Policies
Programs
Collaborate
Help
Contact | Feedback
Tutorials
GitHub
News
Home
/
File
Format
Provenance
Quality
Clear All
Click and hold a term momentarily to select items
without
that term.
File Format
All
None
txt
2198
h5ad
1147
bam
817
csv
763
tsv
625
mtx
424
bed
1
fasta
1
gtf
1
Content Type
All
None
QC metrics
2724
sparse gene count matrix
1528
alignments
672
barcode to element mapping
382
element quantifications
289
sequence barcodes
191
transcriptome alignments
145
sparse peak count matrix
42
contact matrix
1
genes_transcripts
1
genome reference
1
transcriptome reference
1
25 Items
100 Items
300 Items
5977 items
1
2
3
4
5
240
ID
Accession
Alternate Accessions
Assembly
Content Summary
Content Type
File Format
File Set
Lab
Reference Files
Status
Transcriptome Annotation
Upload Status
UUID
/alignment-files/PKBFI5947MIIA/
PKBFI5947MIIA
GRCh38
filtered alignments
alignments
bam
/analysis-sets/PKBDS9867LLDH/
/labs/joyce-niland/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
fff3adf3-3d79-473c-b1c8-4c7bbd51a26a
/tabular-files/PKBFI7657TECG/
PKBFI7657TECG
barcode to element mapping
tsv
/analysis-sets/PKBDS6543THTF/
/labs/joyce-niland/
released
validated
ffef3e2f-e7bb-4e7f-865b-671a56f76003
/matrix-files/PKBFI4277VOLY/
PKBFI4277VOLY
gene by cell sparse gene count matrix
sparse gene count matrix
mtx
/analysis-sets/PKBDS2848ZCYL/
/labs/klaus-kaestner/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
ffecee3b-04a1-48c1-82bc-38c2d76aa178
/tabular-files/PKBFI2061GCSI/
PKBFI2061GCSI
GRCh38
element quantifications
tsv
/analysis-sets/PKBDS5408EAEI/
/labs/klaus-kaestner/
released
validated
ffeab1d5-912b-4405-afb8-8b9d9229c5aa
/alignment-files/PKBFI4280YUSM/
PKBFI4280YUSM
GENCODE 39
filtered transcriptome alignments
transcriptome alignments
bam
/analysis-sets/PKBDS4203KSNH/
/labs/klaus-kaestner/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
ffe61c06-93d7-4c34-bf24-e9516c5356f0
/tabular-files/PKBFI9279XNCC/
PKBFI9279XNCC
barcode to element mapping
tsv
/analysis-sets/PKBDS6939NVNR/
/labs/klaus-kaestner/
released
validated
ffe3a326-8b82-4b93-aa40-d15202754071
/matrix-files/PKBFI6884NSUP/
PKBFI6884NSUP
gene by cell sparse gene count matrix
sparse gene count matrix
h5ad
/analysis-sets/PKBDS1578ODWO/
/labs/klaus-kaestner/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
ffe12001-6bb8-444f-a5c8-a39b0d7377a9
/matrix-files/PKBFI8100OWRD/
PKBFI8100OWRD
gene by cell sparse gene count matrix
sparse gene count matrix
h5ad
/analysis-sets/PKBDS5522YXVV/
/labs/joyce-niland/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
ffe0085d-8826-455c-b45c-6c3d80f1f7a5
/tabular-files/PKBFI4604NUMN/
PKBFI4604NUMN
QC metrics
csv
/analysis-sets/PKBDS3380PKTA/
/labs/joyce-niland/
released
validated
ffc9bd20-2441-4015-89bb-5843931bfbea
/matrix-files/PKBFI7751UVNI/
PKBFI7751UVNI
cell by gene sparse gene count matrix
sparse gene count matrix
mtx
/analysis-sets/PKBDS5847QGPP/
/labs/klaus-kaestner/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
ffc99899-f02c-489e-ae57-f1f46c648eef
/tabular-files/PKBFI9821TPGV/
PKBFI9821TPGV
QC metrics
txt
/analysis-sets/PKBDS6939TCMH/
/labs/joyce-niland/
released
validated
ffb86e72-62e7-477f-a4ca-137b82e59b7b
/tabular-files/PKBFI8769YPUJ/
PKBFI8769YPUJ
QC metrics
csv
/analysis-sets/PKBDS4530RFYP/
/labs/joyce-niland/
released
validated
ffb3195e-6edf-4332-9c75-22cdfe6f83fb
/alignment-files/PKBFI2134DKYX/
PKBFI2134DKYX
GRCh38
filtered alignments
alignments
bam
/analysis-sets/PKBDS7481RHDC/
/labs/klaus-kaestner/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
ffa462b8-dfdb-4f51-91b1-2147befd381a
/tabular-files/PKBFI3999YYUM/
PKBFI3999YYUM
QC metrics
txt
/analysis-sets/PKBDS3609OQGX/
/labs/joyce-niland/
released
validated
ff9d30eb-3621-4cf1-9312-1a5284958b9a
/tabular-files/PKBFI5626VPHH/
PKBFI5626VPHH
barcode to element mapping
txt
/analysis-sets/PKBDS8950FUII/
/labs/joyce-niland/
released
validated
ff615dbd-e3cb-47fc-a749-c3482b193d91
/matrix-files/PKBFI8927PZLO/
PKBFI8927PZLO
gene by cell sparse gene count matrix
sparse gene count matrix
h5ad
/analysis-sets/PKBDS7851KFDU/
/labs/joyce-niland/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
ff581981-1b12-4f2b-a844-badd4fb1d9ef
/matrix-files/PKBFI0192PJCH/
PKBFI0192PJCH
cell by gene sparse gene count matrix
sparse gene count matrix
mtx
/analysis-sets/PKBDS3609OQGX/
/labs/joyce-niland/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
ff36929a-81f1-4835-964a-0a8581d4c0e7
/matrix-files/PKBFI0558EVNW/
PKBFI0558EVNW
gene by cell sparse gene count matrix
sparse gene count matrix
h5ad
/analysis-sets/PKBDS5899XLLP/
/labs/joyce-niland/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
ff316ebb-c093-4395-8d3f-d12e2c0681fe
/matrix-files/PKBFI9743AVUJ/
PKBFI9743AVUJ
gene by cell sparse gene count matrix
sparse gene count matrix
h5ad
/analysis-sets/PKBDS0985GXTS/
/labs/joyce-niland/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
ff2daddc-88e7-4c42-94e2-70c5c6fd0026
/matrix-files/PKBFI4160URBL/
PKBFI4160URBL
gene by cell sparse gene count matrix
sparse gene count matrix
h5ad
/analysis-sets/PKBDS5997XWUW/
/labs/klaus-kaestner/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
ff1b8455-f04b-404d-9e61-f2876e04db41
/tabular-files/PKBFI8964HOLA/
PKBFI8964HOLA
QC metrics
txt
/analysis-sets/PKBDS0799JFGO/
/labs/klaus-kaestner/
released
validated
ff14e858-6983-430e-a7fb-8d3d5e31cab7
/matrix-files/PKBFI2020TGQG/
PKBFI2020TGQG
gene by cell sparse gene count matrix
sparse gene count matrix
h5ad
/analysis-sets/PKBDS2129JPJP/
/labs/joyce-niland/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
ff02acdd-0697-4a5e-9dab-b35ecd35f223
/tabular-files/PKBFI6305BOOR/
PKBFI6305BOOR
QC metrics
csv
/analysis-sets/PKBDS7216MXEZ/
/labs/klaus-kaestner/
released
validated
feffce5e-3373-4f51-a387-7166805efa06
/alignment-files/PKBFI5302HQOX/
PKBFI5302HQOX
GENCODE 39
filtered transcriptome alignments
transcriptome alignments
bam
/analysis-sets/PKBDS7218UPUB/
/labs/klaus-kaestner/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
fecfc607-d57b-4877-9e1b-76a6d288f1d2
/matrix-files/PKBFI4220FBRA/
PKBFI4220FBRA
gene by cell sparse gene count matrix
sparse gene count matrix
h5ad
/analysis-sets/PKBDS3380PKTA/
/labs/joyce-niland/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
fecb1934-4316-4c6e-9d8a-b357ff9480d8