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MeasurementSet
Sample
Assay
Library
Provenance
Quality
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Taxa
All
None
Homo sapiens
369
Sample Term
All
None
islet of Langerhans
224
pancreatic A cell
56
exocrine cell
45
type B pancreatic cell
44
25 Items
100 Items
300 Items
369 items
1
2
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15
ID
Accession
Aliases
Alternate Accessions
Assay Targeted Genes
Assay Term
Award
Donors
File Set Type
Lab
Library Construction Platform
Preferred Assay Title
Protocols
Samples
Sequencing Library Types
Status
Summary
Taxa
UUID
/measurement-sets/PKBDS6276JJRU/
PKBDS6276JJRU
joyce-niland:SAMN10737781_scRNAseq_assay_untreated
/assay-terms/OBI_0002631/
/awards/U24DK098085/
/human-donors/PKBDO0189DPPC/
experimental data
/labs/joyce-niland/
scRNA-seq
/primary-islet/PKBSM1887MBQF/
polyA enriched
released
single-cell RNA sequencing assay (scRNA-seq)
Homo sapiens
ffc214b6-7594-4ed7-abeb-213afb07724c
/measurement-sets/PKBDS6113LMCM/
PKBDS6113LMCM
klaus-kaestner:scATAC_isletCells_HPAP-044
/assay-terms/OBI_0002764/
/awards/UC4DK112217/
/human-donors/PKBDO5844FAXW/
experimental data
/labs/klaus-kaestner/
/platform-terms/EFO_0008563/
,
/platform-terms/EFO_0008637/
snATAC-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=5
/primary-islet/PKBSM5730EGRX/
accessible DNA
released
single-cell ATAC-seq (snATAC-seq)
Homo sapiens
ff84d1c0-4b3c-472b-af65-8b3827f7d01d
/measurement-sets/PKBDS6293ZIMN/
PKBDS6293ZIMN
klaus-kaestner:scRNAseq_IsletCells_HPAP-051
/assay-terms/OBI_0002631/
/awards/UC4DK112217/
/human-donors/PKBDO1015YEQK/
experimental data
/labs/klaus-kaestner/
/platform-terms/EFO_0008637/
scRNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=4
/primary-islet/PKBSM4043YPPC/
polyA enriched
released
single-cell RNA sequencing assay (scRNA-seq)
Homo sapiens
ff76f869-ee72-4abd-be9e-e83ae157b890
/measurement-sets/PKBDS4978GIWI/
PKBDS4978GIWI
klaus-kaestner:scRNAseq_IsletCells_HPAP-054
/assay-terms/OBI_0002631/
/awards/UC4DK112217/
/human-donors/PKBDO2480WRMR/
experimental data
/labs/klaus-kaestner/
/platform-terms/EFO_0008637/
scRNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=4
/primary-islet/PKBSM0525CBWM/
polyA enriched
released
single-cell RNA sequencing assay (scRNA-seq)
Homo sapiens
ff277feb-8da2-41b4-b14e-597869f20630
/measurement-sets/PKBDS6581ITMO/
PKBDS6581ITMO
joyce-niland:SAMN10439569_scRNAseq_assay_untreated
/assay-terms/OBI_0002631/
/awards/U24DK098085/
/human-donors/PKBDO5301GZBH/
experimental data
/labs/joyce-niland/
scRNA-seq
/primary-islet/PKBSM3825FNRZ/
polyA enriched
released
single-cell RNA sequencing assay (scRNA-seq)
Homo sapiens
fee5cac5-9bef-41c5-bf56-ae68fa5b15e9
/measurement-sets/PKBDS5167CEXF/
PKBDS5167CEXF
klaus-kaestner:scATAC_isletCells_HPAP-067
/assay-terms/OBI_0002764/
/awards/UC4DK112217/
/human-donors/PKBDO1799FAHR/
experimental data
/labs/klaus-kaestner/
/platform-terms/EFO_0008637/
snATAC-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=5
/primary-islet/PKBSM2945ZOKM/
accessible DNA
released
single-cell ATAC-seq (snATAC-seq)
Homo sapiens
fe3c196c-564f-44b5-94c1-950336ac7c98
/measurement-sets/PKBDS4712MFGY/
PKBDS4712MFGY
klaus-kaestner:scATAC_isletCells_HPAP-055
/assay-terms/OBI_0002764/
/awards/UC4DK112217/
/human-donors/PKBDO1384BFXE/
experimental data
/labs/klaus-kaestner/
/platform-terms/EFO_0008637/
snATAC-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=5
/primary-islet/PKBSM3422VIKK/
accessible DNA
released
single-cell ATAC-seq (snATAC-seq)
Homo sapiens
fc0f3fc4-1d84-474b-ab55-c13f999f3681
/measurement-sets/PKBDS2095DTLM/
PKBDS2095DTLM
klaus-kaestner:pancreaticExocrineCell_MeasurementSet_RNAseq_HPAP-062
/assay-terms/OBI_0003090/
/awards/U01DK123594/
/human-donors/PKBDO0742JZZH/
experimental data
/labs/klaus-kaestner/
/platform-terms/EFO_0008637/
RNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=6
/primary-cells/PKBSM5345IWBE/
rRNA depleted
released
bulk RNA-seq assay (RNA-seq)
Homo sapiens
fb699ab0-7f5e-4401-90b4-d87ad2309a60
/measurement-sets/PKBDS7553VRIH/
PKBDS7553VRIH
joyce-niland:SAMN12022246_scRNAseq_assay_untreated
/assay-terms/OBI_0002631/
/awards/U24DK098085/
/human-donors/PKBDO2444UOCY/
experimental data
/labs/joyce-niland/
scRNA-seq
/primary-islet/PKBSM1414OXUT/
polyA enriched
released
single-cell RNA sequencing assay (scRNA-seq)
Homo sapiens
fae9d54a-34eb-43c2-a2ed-9ffa884467cb
/measurement-sets/PKBDS4059JNUH/
PKBDS4059JNUH
joyce-niland:SAMN09929411_scRNAseq_assay_DMSO36hrtreatment
/assay-terms/OBI_0002631/
/awards/U24DK098085/
/human-donors/PKBDO5437DFNE/
experimental data
/labs/joyce-niland/
scRNA-seq
/primary-islet/PKBSM9873CKZT/
polyA enriched
released
single-cell RNA sequencing assay (scRNA-seq)
Homo sapiens
fa26dae0-b477-482b-bd82-8158b06535a8
/measurement-sets/PKBDS7052WFAQ/
PKBDS7052WFAQ
prodo:HP-21337-01_scRNAseq_assay_IFNg+IL1B+NMMA18hrtreatment
/assay-terms/OBI_0002631/
/awards/PSEUDO2/
/human-donors/PKBDO9542NWXT/
experimental data
/labs/prodo-laboratories/
scRNA-seq
/primary-islet/PKBSM7643EJYF/
polyA enriched
released
single-cell RNA sequencing assay (scRNA-seq)
Homo sapiens
f93a4ac7-03be-4fb5-907a-52bd4b4aaf80
/measurement-sets/PKBDS2706XIGG/
PKBDS2706XIGG
klaus-kaestner:scRNAseq_IsletCells_HPAP-014
/assay-terms/OBI_0002631/
/awards/UC4DK112217/
/human-donors/PKBDO2338WVRY/
experimental data
/labs/klaus-kaestner/
/platform-terms/EFO_0008563/
scRNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=4
/primary-islet/PKBSM4633DYOY/
polyA enriched
released
single-cell RNA sequencing assay (scRNA-seq)
Homo sapiens
f8bc8243-ce90-4407-a2d5-feb08c185796
/measurement-sets/PKBDS4167OESX/
PKBDS4167OESX
joyce-niland:SAMN11633049_scRNAseq_assay_untreated
/assay-terms/OBI_0002631/
/awards/U24DK098085/
/human-donors/PKBDO8296VZNP/
experimental data
/labs/joyce-niland/
scRNA-seq
/primary-islet/PKBSM1642WJOW/
polyA enriched
released
single-cell RNA sequencing assay (scRNA-seq)
Homo sapiens
f894896f-83fa-411a-aba0-77f802af706a
/measurement-sets/PKBDS0814YODS/
PKBDS0814YODS
klaus-kaestner:pancreaticExocrineCell_MeasurementSet_RNAseq_HPAP-013
/assay-terms/OBI_0003090/
/awards/UC4DK112217/
/human-donors/PKBDO9071FTMO/
experimental data
/labs/klaus-kaestner/
RNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=6
/primary-cells/PKBSM8898VHXI/
rRNA depleted
released
bulk RNA-seq assay (RNA-seq)
Homo sapiens
f78511b6-8d85-46b0-af60-930d9cd235ff
/measurement-sets/PKBDS3272HFKW/
PKBDS3272HFKW
klaus-kaestner:pancreaticBetaCell_MeasurementSet_RNAseq_HPAP-052
/assay-terms/OBI_0003090/
/awards/U01DK123594/
/human-donors/PKBDO5965CWYG/
experimental data
/labs/klaus-kaestner/
RNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=6
/primary-cells/PKBSM8515DTTV/
rRNA depleted
released
bulk RNA-seq assay (RNA-seq)
Homo sapiens
f784cb39-c598-43cc-8d4d-361a2b664255
/measurement-sets/PKBDS0357JMLH/
PKBDS0357JMLH
joyce-niland:SAMN13901790_scRNAseq_assay_untreated
/assay-terms/OBI_0002631/
/awards/U24DK098085/
/human-donors/PKBDO9985KPBX/
experimental data
/labs/joyce-niland/
scRNA-seq
/primary-islet/PKBSM3715GHKC/
polyA enriched
released
single-cell RNA sequencing assay (scRNA-seq)
Homo sapiens
f422c88f-c420-49cf-9e16-f19333a99f0c
/measurement-sets/PKBDS4770NDIK/
PKBDS4770NDIK
prodo:HP-20152-01_scRNAseq_assay_untreated
/assay-terms/OBI_0002631/
/awards/PSEUDO2/
/human-donors/PKBDO0935GIUG/
experimental data
/labs/prodo-laboratories/
scRNA-seq
/primary-islet/PKBSM4272SNCP/
polyA enriched
released
single-cell RNA sequencing assay (scRNA-seq)
Homo sapiens
f40b5ad5-2944-4706-80f9-91b2c989faf6
/measurement-sets/PKBDS5284SOKN/
PKBDS5284SOKN
klaus-kaestner:pancreaticExocrineCell_MeasurementSet_RNAseq_HPAP-003
/assay-terms/OBI_0003090/
/awards/UC4DK112217/
/human-donors/PKBDO7906MFMG/
experimental data
/labs/klaus-kaestner/
/platform-terms/EFO_0008637/
RNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=6
/primary-cells/PKBSM8257EYTO/
rRNA depleted
released
bulk RNA-seq assay (RNA-seq)
Homo sapiens
f361cbd0-d784-43f1-a74b-6cca34b021e7
/measurement-sets/PKBDS7148VGQW/
PKBDS7148VGQW
klaus-kaestner:scRNAseq_IsletCells_HPAP-087
/assay-terms/OBI_0002631/
/awards/UC4DK112217/
/human-donors/PKBDO2602KBOX/
experimental data
/labs/klaus-kaestner/
/platform-terms/EFO_0008637/
scRNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=4
/primary-islet/PKBSM8213ZTJQ/
polyA enriched
released
single-cell RNA sequencing assay (scRNA-seq)
Homo sapiens
f2fc2ee7-7d8a-433a-b555-a28b729bfc38
/measurement-sets/PKBDS6231IGWE/
PKBDS6231IGWE
klaus-kaestner:pancreaticAlphaCell_MeasurementSet_RNAseq_HPAP-069
/assay-terms/OBI_0003090/
/awards/UC4DK112217/
/human-donors/PKBDO6376QJPG/
experimental data
/labs/klaus-kaestner/
/platform-terms/EFO_0008637/
RNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=6
/primary-cells/PKBSM2364FBKD/
rRNA depleted
released
bulk RNA-seq assay (RNA-seq)
Homo sapiens
f2819a2c-4ca2-42ec-b6ba-fa9151a25cde
/measurement-sets/PKBDS3462AUOK/
PKBDS3462AUOK
klaus-kaestner:scRNAseq_IsletCells_HPAP-123
/assay-terms/OBI_0002631/
/awards/UC4DK112217/
/human-donors/PKBDO0025LRAS/
experimental data
/labs/klaus-kaestner/
/platform-terms/EFO_0008637/
scRNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=4
/primary-islet/PKBSM2609NYHJ/
polyA enriched
released
single-cell RNA sequencing assay (scRNA-seq)
Homo sapiens
f240cd22-76de-4557-b082-ac35adb23709
/measurement-sets/PKBDS0855BXSR/
PKBDS0855BXSR
klaus-kaestner:pancreaticBetaCell_MeasurementSet_RNAseq_HPAP-058
/assay-terms/OBI_0003090/
/awards/U01DK123594/
/human-donors/PKBDO2389WIHS/
experimental data
/labs/klaus-kaestner/
RNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=6
/primary-cells/PKBSM3467NGIK/
rRNA depleted
released
bulk RNA-seq assay (RNA-seq)
Homo sapiens
f1ec77b0-c144-465b-bcd5-6015df0539ca
/measurement-sets/PKBDS9839WUZL/
PKBDS9839WUZL
joyce-niland:SAMN08611143_scRNAseq_assay_GABA72hrtreatment
/assay-terms/OBI_0002631/
/awards/U24DK098085/
/human-donors/PKBDO2472QACD/
experimental data
/labs/joyce-niland/
scRNA-seq
/primary-islet/PKBSM2029IHLC/
polyA enriched
released
single-cell RNA sequencing assay (scRNA-seq)
Homo sapiens
f0aafd87-744b-4420-a833-8f2c6c011c90
/measurement-sets/PKBDS3032KUYE/
PKBDS3032KUYE
klaus-kaestner:scRNAseq_IsletCells_HPAP-049
/assay-terms/OBI_0002631/
/awards/UC4DK112217/
/human-donors/PKBDO6479CXUF/
experimental data
/labs/klaus-kaestner/
/platform-terms/EFO_0008637/
scRNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=4
/primary-islet/PKBSM1684ABMH/
polyA enriched
released
single-cell RNA sequencing assay (scRNA-seq)
Homo sapiens
edd5ef90-cc96-4f3c-a97e-947bef61b497
/measurement-sets/PKBDS5782IHKY/
PKBDS5782IHKY
klaus-kaestner:pancreaticExocrineCell_MeasurementSet_RNAseq_HPAP-029
/assay-terms/OBI_0003090/
/awards/UC4DK112217/
/human-donors/PKBDO7386MMPN/
experimental data
/labs/klaus-kaestner/
/platform-terms/EFO_0008637/
RNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=6
/primary-cells/PKBSM8005OFFX/
rRNA depleted
released
bulk RNA-seq assay (RNA-seq)
Homo sapiens
ecfbb6c7-2866-4bba-b25a-830dd6d0bfb4