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MeasurementSet
Sample
Assay
Library
Provenance
Quality
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Taxa
All
None
Homo sapiens
1333
Sample Term
All
None
islet of Langerhans
1066
type B pancreatic cell
73
pancreatic A cell
70
EndoC-βH1
65
exocrine cell
45
EndoC-bH3
7
EndoC-bH2
5
EndoC-bH5
2
Report view
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1333 items
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54
ID
Accession
Assay Term
assay_titles
Auxiliary Sets
Base Media
Controls
Data URL
Donor Validation Methods
Donors
External Image URL
File Set Type
Fraction Collection Time (min)
Hormone Assays
input_file_sets
Islet Cell Volume for Functional Assay (IEQ)
Islet Endocrine Cell Composition (%)
Islet Purification for Functional Assay
Islet Purity for Functional Assay (%)
Islet Size/Diameter (μm)
Library Construction Platform
Multiome Size
normalized_glucagon_content
normalized_glucagon_secretion_units
normalized_insulin_content
normalized_insulin_secretion_units
Perifusion Flow Rate
Perifusion Fraction Volume
Perifusion Protocol
Preferred Assay Title
Protocols
Related Multiome Datasets
Samples
Sequencing Chemistry
Sequencing Library Types
Status
Stimuli or Secretagogues
Targeted Genes
Total Number of Islets for Functional Assay
total_dna_content
total_glucagon_content
total_insulin_content
total_islet_cell_volume
Were the Islets Shipped?
/measurement-sets/PKBDS0823AWQO/
PKBDS0823AWQO
/assay-terms/OBI_0002631/
/human-donors/PKBDO4069UFSJ/
experimental data
scRNA-seq
/primary-islet/PKBSM4984ZBLV/
v2
released
/measurement-sets/PKBDS6276JJRU/
PKBDS6276JJRU
/assay-terms/OBI_0002631/
/human-donors/PKBDO0189DPPC/
experimental data
scRNA-seq
/primary-islet/PKBSM1887MBQF/
polyA enriched
released
/measurement-sets/PKBDS6113LMCM/
PKBDS6113LMCM
/assay-terms/OBI_0002764/
/human-donors/PKBDO5844FAXW/
experimental data
/platform-terms/EFO_0008563/
,
/platform-terms/EFO_0008637/
snATAC-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=5
/primary-islet/PKBSM5730EGRX/
accessible DNA
released
/measurement-sets/PKBDS6293ZIMN/
PKBDS6293ZIMN
/assay-terms/OBI_0002631/
/human-donors/PKBDO1015YEQK/
experimental data
/platform-terms/EFO_0008637/
scRNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=4
/primary-islet/PKBSM4043YPPC/
polyA enriched
released
/measurement-sets/PKBDS0812QKGU/
PKBDS0812QKGU
/assay-terms/OBI_0003778/
5.6 mM
/human-donors/PKBDO1507ATGZ/
experimental data
3
Glucagon, Insulin
beta:61%;alpha:34%;delta:5%
Hand-picked
100
1
3
https://www.protocols.io/view/analysis-of-islet-function-in-dynamic-cell-perifus-eq2ly4nxrlx9/v1
/primary-islet/PKBSM0030ZHHH/
released
16.7 mM glucose;16.7 mM glucose + 100 μM IBMX;1.7mM glucose + 1 μM Epinephrine;5.6 mM glucose + 20 mM KCl
95
true
/measurement-sets/PKBDS3853UWGI/
PKBDS3853UWGI
/assay-terms/OBI_0003778/
5.6 mM
/human-donors/PKBDO7910PILN/
experimental data
3
Glucagon, Insulin
beta:39%;alpha:52%;delta:9%
Hand-picked
100
214.8
1
3
https://www.protocols.io/view/analysis-of-islet-function-in-dynamic-cell-perifus-eq2ly4nxrlx9/v1
/primary-islet/PKBSM1186RBKE/
released
16.7 mM glucose;16.7 mM glucose + 100 μM IBMX;1.7mM glucose + 1 μM Epinephrine;5.6 mM glucose + 20 mM KCl
107
true
/measurement-sets/PKBDS4978GIWI/
PKBDS4978GIWI
/assay-terms/OBI_0002631/
/human-donors/PKBDO2480WRMR/
experimental data
/platform-terms/EFO_0008637/
scRNA-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=4
/primary-islet/PKBSM0525CBWM/
polyA enriched
released
/measurement-sets/PKBDS9123UPDF/
PKBDS9123UPDF
/assay-terms/OBI_0003090/
/human-donors/PKBDO5754ZYGQ/
experimental data
RNA-seq
/primary-islet/PKBSM8905WQGL/
rRNA depleted
released
/measurement-sets/PKBDS6581ITMO/
PKBDS6581ITMO
/assay-terms/OBI_0002631/
/human-donors/PKBDO5301GZBH/
experimental data
scRNA-seq
/primary-islet/PKBSM3825FNRZ/
polyA enriched
released
/measurement-sets/PKBDS6660RQXA/
PKBDS6660RQXA
/assay-terms/OBI_0002631/
/human-donors/PKBDO0755OVBR/
experimental data
scRNA-seq
/primary-islet/PKBSM8339ZAIT/
v3
released
/measurement-sets/PKBDS4009MXBJ/
PKBDS4009MXBJ
/assay-terms/OBI_0003778/
5.6 mM
/human-donors/PKBDO4908OEMJ/
experimental data
3
Glucagon, Insulin
beta:72%;alpha:17%;delta:12%
Hand-picked
100
203
1
3
https://www.protocols.io/view/analysis-of-islet-function-in-dynamic-cell-perifus-eq2ly4nxrlx9/v1
/primary-islet/PKBSM1056EWDO/
released
16.7 mM glucose;16.7 mM glucose + 100 μM IBMX;1.7mM glucose + 1 μM Epinephrine;5.6 mM glucose + 20 mM KCl
90
true
/measurement-sets/PKBDS5167CEXF/
PKBDS5167CEXF
/assay-terms/OBI_0002764/
/human-donors/PKBDO1799FAHR/
experimental data
/platform-terms/EFO_0008637/
snATAC-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=5
/primary-islet/PKBSM2945ZOKM/
accessible DNA
released
/measurement-sets/PKBDS0078LVZB/
PKBDS0078LVZB
/assay-terms/OBI_0003090/
/human-donors/PKBDO6041QMNA/
experimental data
RNA-seq
/primary-islet/PKBSM2365KOHC/
rRNA depleted
released
/measurement-sets/PKBDS7607HUSL/
PKBDS7607HUSL
/assay-terms/OBI_0003778/
5.6 mM
/human-donors/PKBDO0479XDQG/
experimental data
3
Glucagon, Insulin
beta:71%;alpha:21%;delta:8%
Hand-picked
100
1
3
https://www.protocols.io/view/analysis-of-islet-function-in-dynamic-cell-perifus-eq2ly4nxrlx9/v1
/primary-islet/PKBSM0807RBGJ/
released
16.7 mM glucose;16.7 mM glucose + 100 μM IBMX;1.7mM glucose + 1 μM Epinephrine;5.6 mM glucose + 20 mM KCl
true
/measurement-sets/PKBDS0404BDTS/
PKBDS0404BDTS
/assay-terms/OBI_0003778/
5.6 mM
/human-donors/PKBDO1166IWTU/
experimental data
3
Glucagon, Insulin
beta:72%;alpha:24%;delta:4%
Hand-picked
100
1
3
https://www.protocols.io/view/analysis-of-islet-function-in-dynamic-cell-perifus-eq2ly4nxrlx9/v1
/primary-islet/PKBSM1558AZDO/
released
16.7 mM glucose;16.7 mM glucose + 100 μM IBMX;1.7mM glucose + 1 μM Epinephrine;5.6 mM glucose + 20 mM KCl
true
/measurement-sets/PKBDS7423RRHO/
PKBDS7423RRHO
/assay-terms/OBI_0002631/
/human-donors/PKBDO9217YCLV/
experimental data
scRNA-seq
/primary-islet/PKBSM6394EOTZ/
v3
released
/measurement-sets/PKBDS0310UCQN/
PKBDS0310UCQN
/assay-terms/OBI_0003090/
/human-donors/PKBDO8293TLPA/
experimental data
RNA-seq
/human-beta-cell-line/PKBSM9768JJCM/
rRNA depleted
released
/measurement-sets/PKBDS9018WJDD/
PKBDS9018WJDD
/assay-terms/OBI_0003778/
5.6 mM
/human-donors/PKBDO5045SUXU/
experimental data
3
Glucagon, Insulin
beta:60%;alpha:29%;delta:11%
Hand-picked
100
214.83
1
3
https://www.protocols.io/view/analysis-of-islet-function-in-dynamic-cell-perifus-eq2ly4nxrlx9/v1
/primary-islet/PKBSM9162ZKLD/
released
16.7 mM glucose;16.7 mM glucose + 100 μM IBMX;1.7mM glucose + 1 μM Epinephrine;5.6 mM glucose + 20 mM KCl
106
true
/measurement-sets/PKBDS7020EWRT/
PKBDS7020EWRT
/assay-terms/OBI_0003778/
5.6 mM
/human-donors/PKBDO0829PTQB/
experimental data
3
Glucagon, Insulin
beta:81.7%;alpha:9.7%;delta:8.6%
Hand-picked
100
170.19
1
3
https://www.protocols.io/view/analysis-of-islet-function-in-dynamic-cell-perifus-eq2ly4nxrlx9/v1
/primary-islet/PKBSM9656FXOS/
released
16.7 mM glucose;16.7 mM glucose + 100 μM IBMX;1.7mM glucose + 1 μM Epinephrine;5.6 mM glucose + 20 mM KCl
119
true
/measurement-sets/PKBDS3970PPCN/
PKBDS3970PPCN
/assay-terms/OBI_0003090/
/human-donors/PKBDO2175GJFU/
experimental data
RNA-seq
/primary-islet/PKBSM8071EDGU/
rRNA depleted
released
/measurement-sets/PKBDS6074TCZC/
PKBDS6074TCZC
/assay-terms/OBI_0002631/
/human-donors/PKBDO9152GWOH/
experimental data
scRNA-seq
/primary-islet/PKBSM6362EVWN/
v2
released
/measurement-sets/PKBDS4099IJWS/
PKBDS4099IJWS
/assay-terms/OBI_0003778/
5.6 mM
/human-donors/PKBDO3784XVAO/
experimental data
3
Glucagon, Insulin
beta:41%;alpha:53%;delta:6%
Hand-picked
100
205.18
1
3
https://www.protocols.io/view/analysis-of-islet-function-in-dynamic-cell-perifus-eq2ly4nxrlx9/v1
/primary-islet/PKBSM1416RFAA/
released
16.7 mM glucose;16.7 mM glucose + 100 μM IBMX;1.7mM glucose + 1 μM Epinephrine;5.6 mM glucose + 20 mM KCl
107
true
/measurement-sets/PKBDS5412UFFV/
PKBDS5412UFFV
/assay-terms/OBI_0003090/
/human-donors/PKBDO8092ZCIZ/
experimental data
RNA-seq
/primary-cells/PKBSM5652CITA/
rRNA depleted
released
/measurement-sets/PKBDS3582HUIO/
PKBDS3582HUIO
/assay-terms/OBI_0003090/
/human-donors/PKBDO2000XSQI/
experimental data
RNA-seq
/primary-islet/PKBSM7972ILZV/
rRNA depleted
released
/measurement-sets/PKBDS4712MFGY/
PKBDS4712MFGY
/assay-terms/OBI_0002764/
/human-donors/PKBDO1384BFXE/
experimental data
/platform-terms/EFO_0008637/
snATAC-seq
https://hpap.pmacs.upenn.edu/explore/workflow/islet-molecular-phenotyping-studies?protocol=5
/primary-islet/PKBSM3422VIKK/
accessible DNA
released
Data Library