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22688 items
PKBFI2350HVFC
GENCODE 39
data coordination
transcriptome alignments
The file contains RNA-seq reads aligned to a reference transcriptome in BAM format, used for gene expression and transcript analysis.
bam
/analysis-sets/PKBDS3079NZNK/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
PKBSM0072YVOU
primary islet
2016-08-18
Islet biosample from human donor SAMN08769204 in the IIDP database
released
Homo sapiens
PKBFI5199FJNF
GRCh38
data coordination
QC metrics
The file contains statistics on duplicate reads, including the number of marked duplicates and related metrics.
txt
/analysis-sets/PKBDS8240DOTA/
released
validated
PKBDS9987CZYJ
Islet function
islet_function_perifusion
Analysis of dynamic islet perifusion assay for human donor RRID:SAMN15314807
intermediate analysis
released
Homo sapiens
PKBFI3064AUYB
GENCODE 39
data coordination
transcriptome alignments
The file contains RNA-seq reads aligned to a reference transcriptome in BAM format, used for gene expression and transcript analysis.
bam
/analysis-sets/PKBDS1007CQKS/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
PKBSM7466EEBG
primary islet
2018-03-24
Islet biosample from human donor SAMN08799544 in the IIDP database
released
Homo sapiens
PKBFI7310MNDG
GRCh38
meta data table
Analysis of dynamic islet perifusion functional data for human donor RRID:SAMN08768739
tsv
/analysis-sets/PKBDS0161WNBK/
released
validated
v1
PKBFI5947MIIA
GRCh38
data coordination
alignments
bam
/analysis-sets/PKBDS9867LLDH/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
PKBFI7657TECG
data coordination
barcode to element mapping
tsv
/analysis-sets/PKBDS6543THTF/
released
validated
PKBDO6190OSXB
18-39
Human donor SAMN08786556 in the IIDP database
Control Without Diabetes
Hispanic
Male
released
PKBFI4277VOLY
data coordination
sparse gene count matrix
mtx
/analysis-sets/PKBDS2848ZCYL/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
PKBDO2390DHUQ
40-64
Human donor HP-19242-01 in the Prodo Laboratories database
Control Without Diabetes
Male
released
PKBFI2061GCSI
GRCh38
data coordination
element quantifications
This file contains gene-level expression quantification, including gene IDs, expected counts, TPM, FPKM, and posterior mean estimates.
tsv
/analysis-sets/PKBDS5408EAEI/
released
validated
PKBDS0823AWQO
Measurement set of scRNA-seq for islet biosample of human donor HPAP-032 from HPAP with no_treatment (HPAP-032)
experimental data
scRNA-seq
v2
released
Homo sapiens
PKBSM2571KMWC
primary islet
Islet biosample from human donor SAMN08774970 in the IIDP database
released
Homo sapiens
PKBFI4280YUSM
GENCODE 39
data coordination
transcriptome alignments
The file contains RNA-seq reads aligned to a reference transcriptome in BAM format, used for gene expression and transcript analysis.
bam
/analysis-sets/PKBDS4203KSNH/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
PKBDO1238GOVB
18-39
Human donor SAMN08784602 in the IIDP database
Control Without Diabetes
Hispanic
Female
released
PKBFI9279XNCC
data coordination
barcode to element mapping
tsv
/analysis-sets/PKBDS6939NVNR/
released
validated
PKBFI3388CAXM
data coordination
differential gene expression quantifications
tsv
/analysis-sets/PKBDS6961LIXT/
released
validated
v1
PKBSM2315YRYE
primary islet
Islet biosample from human donor SAMN08786195 in the IIDP database
released
Homo sapiens
PKBFI6884NSUP
data coordination
sparse gene count matrix
h5ad
/analysis-sets/PKBDS1578ODWO/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
PKBFI6317NLYS
GRCh38
data coordination
alignments
The file contains RNA-seq read alignments with duplicates marked and molecular tags added.
bam
/analysis-sets/PKBDS5928UOGG/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
PKBFI8100OWRD
data coordination
sparse gene count matrix
h5ad
/analysis-sets/PKBDS5522YXVV/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
PKBDO7764MJRA
40-64
Human donor SAMN08768701 in the IIDP database
Control Without Diabetes
Hispanic
Male
Normal
released
PKBDO1170ATLC
18-39
Human donor SAMN15879530 in the nPOD database
Type 1 Diabetes
African American
Female
Diabetes
released
Supported by National Institutes of Health (NIH) grants U24 DK138515, U24 DK138512
Supplemental funds from the NIH Office of Data Science Strategies
Supplemental funds from the NIH Office of Data Science Strategies
