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Audit Error
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unexpected input file set
1194
inconsistent parent sample
436
audit script error
5
upload status not validated
4
missing input file set
3
Audit Not Compliant
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None
missing nih certification
1333
missing protocol
1040
missing description
234
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missing tier 2 field
10112
missing tier 1 field
6222
missing tier 3 field
6222
missing derived from
1566
missing files
1343
inconsistent assays
918
missing age
522
incorrect classifications format
236
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46
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Upload Status
Used by
Version
Volume
Workflow
/alignment-files/PKBFI2350HVFC/
PKBFI2350HVFC
GENCODE 39
data coordination
transcriptome alignments
bam
/analysis-sets/PKBDS3079NZNK/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
/primary-islet/PKBSM0072YVOU/
PKBSM0072YVOU
primary islet
2016-08-18
/human-donors/PKBDO5860EBUN/
/sample-terms/UBERON_0000006/
released
Homo sapiens
/tabular-files/PKBFI5199FJNF/
PKBFI5199FJNF
GRCh38
data coordination
QC metrics
txt
/analysis-sets/PKBDS8240DOTA/
released
validated
/analysis-sets/PKBDS9987CZYJ/
PKBDS9987CZYJ
/human-donors/PKBDO7691YWQE/
intermediate analysis
/measurement-sets/PKBDS9220VSGW/
/primary-islet/PKBSM0542JBBR/
released
Homo sapiens
/alignment-files/PKBFI3064AUYB/
PKBFI3064AUYB
GENCODE 39
data coordination
transcriptome alignments
bam
/analysis-sets/PKBDS1007CQKS/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
/primary-islet/PKBSM7466EEBG/
PKBSM7466EEBG
primary islet
2018-03-24
/human-donors/PKBDO0711CXUD/
/sample-terms/UBERON_0000006/
released
Homo sapiens
/tabular-files/PKBFI7310MNDG/
PKBFI7310MNDG
GRCh38
meta data table
tsv
/analysis-sets/PKBDS0161WNBK/
released
validated
v1
/alignment-files/PKBFI5947MIIA/
PKBFI5947MIIA
GRCh38
data coordination
alignments
bam
/analysis-sets/PKBDS9867LLDH/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
/tabular-files/PKBFI7657TECG/
PKBFI7657TECG
data coordination
barcode to element mapping
tsv
/analysis-sets/PKBDS6543THTF/
released
validated
/human-donors/PKBDO6190OSXB/
PKBDO6190OSXB
Hispanic
Male
released
/matrix-files/PKBFI4277VOLY/
PKBFI4277VOLY
data coordination
sparse gene count matrix
mtx
/analysis-sets/PKBDS2848ZCYL/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
/human-donors/PKBDO2390DHUQ/
PKBDO2390DHUQ
Male
released
/tabular-files/PKBFI2061GCSI/
PKBFI2061GCSI
GRCh38
data coordination
element quantifications
tsv
/analysis-sets/PKBDS5408EAEI/
released
validated
/measurement-sets/PKBDS0823AWQO/
PKBDS0823AWQO
/assay-terms/OBI_0002631/
/human-donors/PKBDO4069UFSJ/
experimental data
scRNA-seq
/primary-islet/PKBSM4984ZBLV/
v2
released
Homo sapiens
/primary-islet/PKBSM2571KMWC/
PKBSM2571KMWC
primary islet
/human-donors/PKBDO6526ZHFW/
/sample-terms/UBERON_0000006/
released
Homo sapiens
/alignment-files/PKBFI4280YUSM/
PKBFI4280YUSM
GENCODE 39
data coordination
transcriptome alignments
bam
/analysis-sets/PKBDS4203KSNH/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
/human-donors/PKBDO1238GOVB/
PKBDO1238GOVB
Hispanic
Female
released
/tabular-files/PKBFI9279XNCC/
PKBFI9279XNCC
data coordination
barcode to element mapping
tsv
/analysis-sets/PKBDS6939NVNR/
released
validated
/tabular-files/PKBFI3388CAXM/
PKBFI3388CAXM
data coordination
differential gene expression quantifications
tsv
/analysis-sets/PKBDS6961LIXT/
released
validated
v1
/primary-islet/PKBSM2315YRYE/
PKBSM2315YRYE
primary islet
/human-donors/PKBDO3465MWBV/
/sample-terms/UBERON_0000006/
released
Homo sapiens
/matrix-files/PKBFI6884NSUP/
PKBFI6884NSUP
data coordination
sparse gene count matrix
h5ad
/analysis-sets/PKBDS1578ODWO/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
/alignment-files/PKBFI6317NLYS/
PKBFI6317NLYS
GRCh38
data coordination
alignments
bam
/analysis-sets/PKBDS5928UOGG/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
/matrix-files/PKBFI8100OWRD/
PKBFI8100OWRD
data coordination
sparse gene count matrix
h5ad
/analysis-sets/PKBDS5522YXVV/
/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/
released
validated
/human-donors/PKBDO7764MJRA/
PKBDO7764MJRA
Hispanic
Male
released
/human-donors/PKBDO1170ATLC/
PKBDO1170ATLC
African American
Female
released
Data Library