NextFlow pipeline for 10X sn/scRNA-seq data processing
Name
NextFlow pipeline for 10X sn/scRNA-seq data processing
Description
This repository contains all components of the sn/scRNA-seq pipeline developed in the Parker Lab, including alignment, ambient RNA removal and quality control.
Source URL
Aliases
pankbase:sn_scRNAseq-Nextflow
Workflow Repositories
Submitter Comment
All steps are run through nextflow pipeline management and all tools are containerized.
Attribution
Award
Supported by National Institutes of Health (NIH) grants U24 DK138515, U24 DK138512
Supplemental funds from the NIH Office of Data Science Strategies
Supplemental funds from the NIH Office of Data Science Strategies