PKBSM0072YVOU

primary islet

2016-08-18

Islet biosample from human donor SAMN08769204 in the IIDP database

Joyce Niland, CoH

released

islet of Langerhans cell, male, Homo sapiens

Homo sapiens

Homo sapiens

PKBSM7466EEBG

primary islet

2018-03-24

Islet biosample from human donor SAMN08799544 in the IIDP database

Joyce Niland, CoH

released

islet of Langerhans cell, female, Homo sapiens

Homo sapiens

Homo sapiens

PKBFI5947MIIA

GRCh38

data coordination

filtered alignments

alignments

bam

/analysis-sets/PKBDS9867LLDH/

Pankbase Consortium, PanKbase

/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/

released

GRCh38 filtered alignments

validated

PKBFI7657TECG

data coordination

barcode to element mapping

tsv

/analysis-sets/PKBDS6543THTF/

Pankbase Consortium, PanKbase

released

barcode to element mapping

validated

PKBDO6190OSXB

IIDP

Human donor SAMN08786556 in the IIDP database

Hispanic

male

IIDP:SAMN08786556

Joyce Niland, CoH

PMID:19366778, PMID:20447343, PMID:22889479

released

PKBDO6190OSXB

Homo sapiens

PKBFI4277VOLY

data coordination

gene by cell sparse gene count matrix

sparse gene count matrix

mtx

/analysis-sets/PKBDS2848ZCYL/

Pankbase Consortium, PanKbase

/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/

released

gene by cell sparse gene count matrix

validated

PKBDO2390DHUQ

Prodo

Human donor HP-19242-01 in the Prodo Laboratories database

male

Prodo:HP-19242-01

Prodo Laboratories, PRODO

released

PKBDO2390DHUQ

Homo sapiens

PKBFI2061GCSI

GRCh38

data coordination

element quantifications

This file contains gene-level expression quantification, including gene IDs, expected counts, TPM, FPKM, and posterior mean estimates.

tsv

/analysis-sets/PKBDS5408EAEI/

Pankbase Consortium, PanKbase

released

GRCh38 element quantifications

validated

PKBDS0823AWQO

Measurement set of scRNA-seq for islet biosample of human donor HPAP-032 from HPAP with no_treatment (HPAP-032)

experimental data

Klaus Kaestner, UPenn

scRNA-seq

released

single-cell RNA sequencing assay (scRNA-seq)

Homo sapiens

PKBSM2571KMWC

primary islet

Islet biosample from human donor SAMN08774970 in the IIDP database

Joyce Niland, CoH

released

islet of Langerhans cell, male, Homo sapiens

Homo sapiens

Homo sapiens

PKBFI4280YUSM

GENCODE 39

data coordination

PanKbase

filtered transcriptome alignments

transcriptome alignments

The file contains RNA-seq reads aligned to a reference transcriptome in BAM format, used for gene expression and transcript analysis.

bam

/analysis-sets/PKBDS4203KSNH/

Pankbase Consortium, PanKbase

/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/

released

GENCODE 39 filtered transcriptome alignments

validated

PKBDO1238GOVB

IIDP, Prodo

Human donor SAMN08784602 in the IIDP database

Hispanic

female

IIDP:SAMN08784602, Prodo:12280-01

Joyce Niland, CoH

PMID:19366778, PMID:20447343, PMID:22889479

released

PKBDO1238GOVB

Homo sapiens

PKBFI9279XNCC

data coordination

barcode to element mapping

tsv

/analysis-sets/PKBDS6939NVNR/

Pankbase Consortium, PanKbase

released

barcode to element mapping

validated

PKBFI3388CAXM

data coordination

differential gene expression quantifications

tsv

/analysis-sets/PKBDS6961LIXT/

Pankbase Consortium, PanKbase

released

differential gene expression quantifications

validated

PKBSM2315YRYE

primary islet

Islet biosample from human donor SAMN08786195 in the IIDP database

Joyce Niland, CoH

released

islet of Langerhans cell, female, Homo sapiens

Homo sapiens

Homo sapiens

PKBFI6884NSUP

data coordination

gene by cell sparse gene count matrix

sparse gene count matrix

h5ad

/analysis-sets/PKBDS1578ODWO/

Pankbase Consortium, PanKbase

/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/

released

gene by cell sparse gene count matrix

validated

PKBFI8100OWRD

data coordination

gene by cell sparse gene count matrix

sparse gene count matrix

h5ad

/analysis-sets/PKBDS5522YXVV/

Pankbase Consortium, PanKbase

/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/

released

gene by cell sparse gene count matrix

validated

PKBDO7764MJRA

IIDP

Human donor SAMN08768701 in the IIDP database

Hispanic

male

HIPP:HIPP56, IIDP:SAMN08768701

Joyce Niland, CoH

PMID:19366778, PMID:20447343, PMID:22889479

released

PKBDO7764MJRA

Homo sapiens

PKBDO1170ATLC

nPOD

Human donor SAMN15879530 in the nPOD database

African American

female

nPOD_portal:6477

Mark Atkinson, UFHealth

PMID:22585677, PMID:24325575

released

PKBDO1170ATLC

Homo sapiens

PKBFI4604NUMN

data coordination

QC metrics

csv

/analysis-sets/PKBDS3380PKTA/

Pankbase Consortium, PanKbase

released

QC metrics

validated

PKBFI7751UVNI

data coordination

cell by gene sparse gene count matrix

sparse gene count matrix

mtx

/analysis-sets/PKBDS5847QGPP/

Pankbase Consortium, PanKbase

/reference-files/PKBFI0723SUOK/, /reference-files/PKBFI6475GTLH/

released

cell by gene sparse gene count matrix

validated

PKBDS6276JJRU

experimental data

Joyce Niland, CoH

scRNA-seq

polyA enriched

released

single-cell RNA sequencing assay (scRNA-seq)

Homo sapiens

PKBFI9821TPGV

data coordination

QC metrics

txt

/analysis-sets/PKBDS6939TCMH/

Pankbase Consortium, PanKbase

released

QC metrics

validated

PKBFI8769YPUJ

data coordination

QC metrics

csv

/analysis-sets/PKBDS4530RFYP/

Pankbase Consortium, PanKbase

released

QC metrics

validated

amyotrophic lateral sclerosis 15, with or without frontotemporal dementia, X-linked dominant,amyotrophic lateral sclerosis caused by mutation in UBQLN2,ALS15,amyotrophic lateral sclerosis 15, with or without frontotemporal dementia,UBQLN2 amyotrophic lateral sclerosis,amyotrophic lateral sclerosis 15,amyotrophic lateral sclerosis type 15

MONDO_0010459

released

amyotrophic lateral sclerosis type 15

ALS15, amyotrophic lateral sclerosis 15, amyotrophic lateral sclerosis 15, with or without frontotemporal dementia, amyotrophic lateral sclerosis 15, with or without frontotemporal dementia, X-linked dominant, amyotrophic lateral sclerosis caused by mutation in UBQLN2, amyotrophic lateral sclerosis type 15, UBQLN2 amyotrophic lateral sclerosis

MONDO:0010459

amyotrophic lateral sclerosis type 15