PKBDO4259MLYO

released

PKBDO4259MLYO

released
RRID RRID:SAMN19776442Program Donor ID SAMN19776442

Clinical summary

Diabetes status
Type 1 Diabetes
Age (y)
42
Age group
40-64
BMI
36.8
Height (cm)
—
Weight (kg)
—
HbA1c %
6
C-Peptide (ng/ml)
5.27
Diabetes duration
2
AAB summary
GADA+
AAB count
1

Demographics

Age (y)
42
Age group
40-64
Pediatric
No
Gender
Female
Genetic Sex
Female
Sex discordant
No
Ethnicity
White
Predicted genetic ancestry
European (97%), African (2%), Admixed-American (1%)
Dominant genetic ancestry
European

Additional clinical

Diabetes (ontology)
T1D stage
Stage 3: one or more autoantibodies and diagnostic hyperglycemia or T1D diagnosis
Tier 1 complete
Yes
Family history of diabetes
TRUE
Family history relationship
Father, Sister
Living donor
No
Cause of death
Head Trauma
Donation type
Donation after brain death
Hospital stay (h)
62
Medication
Glipizide

Autoantibodies

Summary
GADA+
Any positive
Yes
Tested
Yes
Positive count
1
GADAPositive
567 unit/ml
1
IAANegative
-0.006 unit/ml
IA2Negative
0 unit/ml
ZNT8Negative
-0.004 unit/ml

HLA typing

LocusAllele 1Allele 2Method
A0232RT-PCR
A02:0132:01NGS
B15:0144:02NGS
B4462RT-PCR
Bw4NDNDRT-PCR
Bw6NDNDRT-PCR
C03:0305:01NGS
CNDNDRT-PCR
DPA101:0302:07NGS
DPB103:0119:01NGS
DPB1NDNDRT-PCR
DQA101:0205:01NGS
DQA1NDNDRT-PCR
DQB102:0106:02NGS
DQB1NDNDRT-PCR
DR1517RT-PCR
DRB115:0103:01NGS
DRB3—01:01NGS
DRB4——NGS
DRB501:01—NGS

Data available

Datasets
Genotyping, HLA_typing, RNAseq, ATAC-seq, Function, Morphology, CyTof, Histology, imaging_mass_spec, TCRseq, BCRseq, Flow_cytometry
Tissues
unspecified, Islet, Pancreas, Spleen, Lymph, Peripheral_blood

Genetics

GenotypingAccess dataset
HLA_typingAccess dataset

Pancreas

imaging_mass_specAccess dataset

Spleen

Lymph

Flow_cytometryAccess dataset

Peripheral_blood

Flow_cytometryAccess dataset

Supplementary

HPAP
Identifiers
PANC-DB:HPAP-010
Pancreas tissue available
Yes
Publication identifiers
PMID:31127054, PMID:36206763
Description
Human pancreas donor SAMN19776442 in the HPAP database
External resources
PANC-DB:HPAP-010

Attribution

HPAP collection
Data Library