RNAseq GTEx pipeline quality control step

released

Title

Description

RNA-SeQC 2, an efficient reimplementation of RNA-SeQC (DeLuca et al., 2012) that adds multiple metrics designed to characterize sample quality across a wide range of RNA-seq protocols.

Step Label

rnaseqc-quality-control-step

Analysis Step Types

file format conversion

Workflow

PKBWF6231IPHV

Input Content Types

alignments

Output Content Types

sparse gene count matrix, sparse transcript count matrix

Parents

RNAseq GTEx pipeline Picard mark duplicates step

Aliases

kyle-gaulton:workflow_RNAseqPipelineForGTExConsortium_step5_RNA-SeQC

RNAseq GTEx pipeline quality control step

Attribution