RNAseq GTEx pipeline quality control step
Title
RNAseq GTEx pipeline quality control step
Description
RNA-SeQC 2, an efficient reimplementation of RNA-SeQC (DeLuca et al., 2012) that adds multiple metrics designed to characterize sample quality across a wide range of RNA-seq protocols.
Step Label
rnaseqc-quality-control-step
Analysis Step Types
file format conversion
Workflow
Input Content Types
alignments
Output Content Types
sparse gene count matrix, sparse transcript count matrix
Parents
Attribution
Funding
Supported by National Institutes of Health (NIH) grants U24 DK138515, U24 DK138512
Supplemental funds from the NIH Office of Data Science Strategies
Supplemental funds from the NIH Office of Data Science Strategies
