{
"@context": "/terms/",
"@id": "/analysis-steps/PKBWF6231IPHV-rnaseqc-quality-control-step/",
"@type": [
"AnalysisStep",
"Item"
],
"aliases": [
"kyle-gaulton:workflow_RNAseqPipelineForGTExConsortium_step5_RNA-SeQC"
],
"analysis_step_types": [
"file format conversion"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released analysis step [PKBWF6231IPHV-rnaseqc-quality-control-step](/analysis-steps/PKBWF6231IPHV-rnaseqc-quality-control-step/) has deleted subobject award [U24DK13851](/awards/U24DK13851/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/analysis-steps/PKBWF6231IPHV-rnaseqc-quality-control-step/"
}
]
},
"award": {
"@id": "/awards/U24DK13851/",
"component": "data coordination"
},
"creation_timestamp": "2024-12-04T19:19:19.616704+00:00",
"description": "RNA-SeQC 2, an efficient reimplementation of RNA-SeQC (DeLuca et al., 2012) that adds multiple metrics designed to characterize sample quality across a wide range of RNA-seq protocols.",
"input_content_types": [
"alignments"
],
"lab": {
"@id": "/labs/pankbase-consortium/",
"title": "Pankbase Consortium, PanKbase"
},
"name": "PKBWF6231IPHV-rnaseqc-quality-control-step",
"output_content_types": [
"sparse gene count matrix",
"sparse transcript count matrix"
],
"parents": [
{
"@id": "/analysis-steps/PKBWF6231IPHV-picard-mark-duplicates-step/",
"title": "RNAseq GTEx pipeline Picard mark duplicates step"
}
],
"release_timestamp": "2025-01-10T07:46:13.602545+00:00",
"schema_version": "5",
"status": "released",
"step_label": "rnaseqc-quality-control-step",
"submitted_by": {
"@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
"title": "Ying Sun"
},
"summary": "1f57a4a1-c10f-49e3-98d1-4a75ce0774a3",
"title": "RNAseq GTEx pipeline quality control step",
"uuid": "1f57a4a1-c10f-49e3-98d1-4a75ce0774a3",
"workflow": {
"@id": "/workflows/PKBWF6231IPHV/",
"accession": "PKBWF6231IPHV"
}
}