RNAseq GTEx pipeline BAM to FASTQ conversion step
Title
RNAseq GTEx pipeline BAM to FASTQ conversion step
Description
Converts a SAM or BAM file to FASTQ. This tool extracts read sequences and base quality scores from the input SAM/BAM file and outputs them in FASTQ format. This can be used by way of a pipe to run BWA MEM on unmapped BAM (uBAM) files efficiently.
Step Label
bam-to-fastq-conversion-step
Analysis Step Types
file format conversion
Workflow
Input Content Types
alignments
Output Content Types
reads
Attribution
Funding
Supported by National Institutes of Health (NIH) grants U24 DK138515, U24 DK138512
Supplemental funds from the NIH Office of Data Science Strategies
Supplemental funds from the NIH Office of Data Science Strategies
