RNAseq GTEx pipeline BAM to FASTQ conversion step

released

Title

Description

Converts a SAM or BAM file to FASTQ. This tool extracts read sequences and base quality scores from the input SAM/BAM file and outputs them in FASTQ format. This can be used by way of a pipe to run BWA MEM on unmapped BAM (uBAM) files efficiently.

Step Label

bam-to-fastq-conversion-step

Analysis Step Types

file format conversion

Workflow

PKBWF6231IPHV

Input Content Types

alignments

Output Content Types

reads

Aliases

kyle-gaulton:workflow_RNAseqPipelineForGTExConsortium_step1_BamToFastq

RNAseq GTEx pipeline BAM to FASTQ conversion step

Attribution