RNAseq GTEx pipeline BAM to FASTQ conversion step

{
    "@context": "/terms/",
    "@id": "/analysis-steps/PKBWF6231IPHV-bam-to-fastq-conversion-step/",
    "@type": [
        "AnalysisStep",
        "Item"
    ],
    "aliases": [
        "kyle-gaulton:workflow_RNAseqPipelineForGTExConsortium_step1_BamToFastq"
    ],
    "analysis_step_types": [
        "file format conversion"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released analysis step [PKBWF6231IPHV-bam-to-fastq-conversion-step](/analysis-steps/PKBWF6231IPHV-bam-to-fastq-conversion-step/) has deleted subobject award [U24DK13851](/awards/U24DK13851/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/analysis-steps/PKBWF6231IPHV-bam-to-fastq-conversion-step/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK13851/",
        "component": "data coordination"
    },
    "creation_timestamp": "2024-12-04T18:04:15.095903+00:00",
    "description": "Converts a SAM or BAM file to FASTQ. This tool extracts read sequences and base quality scores from the input SAM/BAM file and outputs them in FASTQ format. This can be used by way of a pipe to run BWA MEM on unmapped BAM (uBAM) files efficiently.",
    "input_content_types": [
        "alignments"
    ],
    "lab": {
        "@id": "/labs/pankbase-consortium/",
        "title": "Pankbase Consortium, PanKbase"
    },
    "name": "PKBWF6231IPHV-bam-to-fastq-conversion-step",
    "output_content_types": [
        "reads"
    ],
    "release_timestamp": "2025-01-10T07:46:13.163095+00:00",
    "schema_version": "5",
    "status": "released",
    "step_label": "bam-to-fastq-conversion-step",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "summary": "03074c1c-1247-45e9-830a-ac75a691c6fc",
    "title": "RNAseq GTEx pipeline BAM to FASTQ conversion step",
    "uuid": "03074c1c-1247-45e9-830a-ac75a691c6fc",
    "workflow": {
        "@id": "/workflows/PKBWF6231IPHV/",
        "accession": "PKBWF6231IPHV"
    }
}