RNA-seq pipeline for the GTEx Consortium

{
    "@context": "/terms/",
    "@id": "/workflows/PKBWF6231IPHV/",
    "@type": [
        "Workflow",
        "Item"
    ],
    "accession": "PKBWF6231IPHV",
    "aliases": [
        "kyle-gaulton:workflow_RNAseqPipelineForGTExConsortium"
    ],
    "analysis_steps": [
        "/analysis-steps/PKBWF6231IPHV-picard-mark-duplicates-step/",
        "/analysis-steps/PKBWF6231IPHV-rnaseqc-quality-control-step/",
        "/analysis-steps/PKBWF6231IPHV-bam-to-fastq-conversion-step/",
        "/analysis-steps/PKBWF6231IPHV-star-alignment-step/",
        "/analysis-steps/PKBWF6231IPHV-bamsync-optional-step/",
        "/analysis-steps/PKBWF6231IPHV-rsemtranscript-quantification-step/"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/U24DK1385121/",
        "component": "data coordination"
    },
    "collections": [
        "PanKbase"
    ],
    "creation_timestamp": "2024-12-03T19:22:19.811186+00:00",
    "description": "This repository contains all components of the RNA-seq pipeline used by the GTEx Consortium, including alignment, expression quantification, and quality control.",
    "lab": {
        "@id": "/labs/pankbase-consortium/",
        "title": "Pankbase Consortium, PanKbase"
    },
    "name": "RNA-seq pipeline for the GTEx Consortium",
    "notes": "PanKbase bulk RNA-seq pipeline",
    "release_timestamp": "2025-01-10T04:33:19.226842+00:00",
    "schema_version": "4",
    "source_url": "https://github.com/broadinstitute/gtex-pipeline/tree/master/rnaseq",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "submitter_comment": "The GTEx RNA-seq pipeline is provided as a Docker image.",
    "summary": "PKBWF6231IPHV",
    "uuid": "c6fb133b-153d-4e91-a602-9fbe616e277b",
    "workflow_repositories": [
        "https://hub.docker.com/r/broadinstitute/gtex_rnaseq/"
    ],
    "workflow_version": 10
}