snATAC pipeline

{
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    "@id": "/workflows/PKBWF1943AUOL/",
    "@type": [
        "Workflow",
        "Item"
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    "accession": "PKBWF1943AUOL",
    "aliases": [
        "pankbase:snATAC"
    ],
    "analysis_steps": [],
    "audit": {},
    "award": {
        "@id": "/awards/U24DK1385121/",
        "component": "data coordination"
    },
    "collections": [
        "PanKbase"
    ],
    "creation_timestamp": "2025-01-10T07:21:18.924999+00:00",
    "description": "This repository contains all components of the snATAC-seq pipeline used by the PanKbase Consortium, including Generate position-sorted BAM files using Cell Ranger ATAC, Generate QC Metrics and Chromatin Accessibility Matrices, Window-Based Clustering, Multiplet Detection with AMULET, Removing Multiplets and Reclustering and Peak Based Clustering and cell type annotation",
    "lab": {
        "@id": "/labs/pankbase-consortium/",
        "title": "Pankbase Consortium, PanKbase"
    },
    "name": "snATAC pipeline",
    "release_timestamp": "2025-01-10T01:34:34.487993+00:00",
    "schema_version": "4",
    "source_url": "https://github.com/PanKbase-pipelines/HPAP-scATAC-seq",
    "status": "released",
    "submitted_by": {
        "@id": "/users/7e95dcd6-9c35-4082-9c53-09d14c5752be/",
        "title": "Parul Kudtarkar"
    },
    "summary": "PKBWF1943AUOL",
    "uuid": "6873f48d-6386-4d2a-8ab4-bf7837d11e3b",
    "workflow_repositories": [
        "https://github.com/PanKbase-pipelines/HPAP-scATAC-seq"
    ]
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