PKBFI5887OGWB

{
    "@context": "/terms/",
    "@id": "/tabular-files/PKBFI5887OGWB/",
    "@type": [
        "TabularFile",
        "File",
        "Item"
    ],
    "accession": "PKBFI5887OGWB",
    "aliases": [
        "pankbase-consortium:140scRNAseqDonors_HPAP-IIDP-Prodo_v3.3_RUVnormalizedPseudoBulkCounts_DE_beta_DEresult"
    ],
    "analysis_step_version": "/analysis-step-versions/ce0270c1-3e40-4326-a24e-e142b7caa387/",
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released tabular file [PKBFI5887OGWB](/tabular-files/PKBFI5887OGWB/) has in progress subobject analysis step version [ce0270c1-3e40-4326-a24e-e142b7caa387](/analysis-step-versions/ce0270c1-3e40-4326-a24e-e142b7caa387/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/tabular-files/PKBFI5887OGWB/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK138512/",
        "component": "data coordination"
    },
    "content_type": "differential gene expression quantifications",
    "controlled_access": false,
    "creation_timestamp": "2025-06-17T18:31:22.086282+00:00",
    "derived_from": [
        "/matrix-files/PKBFI1695DUZE/"
    ],
    "description": "Beta DE results with all genes with sufficient counts to go into the modeling process. 2.1. The prefiltering criteria is that we only keep protein-coding genes with >= 10 raw counts in >= 25% of samples. 2.2. There will be genes within the file that passed the criteria in 2.1 but has NA adj. p-value and non-NA values in other metrics.",
    "file_format": "txt",
    "file_set": "/analysis-sets/PKBDS3519RAFX/",
    "file_url": "https://pankbase-data-v1.s3.us-west-2.amazonaws.com/analysis_resources/single_cell_expression/20250522_data_for_platform/Beta_k-chosen_fdr0.05_all.txt",
    "gene_list_for": [],
    "href": "/tabular-files/PKBFI5887OGWB/@@download/PKBFI5887OGWB.txt.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/pankbase-consortium/",
        "title": "Pankbase Consortium, PanKbase"
    },
    "loci_list_for": [],
    "md5sum": "424fbbcf121f607f886df072da411d69",
    "release_timestamp": "2025-06-18T18:32:09.647030+00:00",
    "schema_version": "11",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "summary": "differential gene expression quantifications",
    "upload_status": "validated",
    "uuid": "b47418f4-8eb9-4ee4-9805-9b2f18ccc2dc"
}