samtofastq

{
    "@context": "/terms/",
    "@id": "/software/samtofastq/",
    "@type": [
        "Software",
        "Item"
    ],
    "aliases": [
        "kyle-gaulton:software_SamToFastq"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released software [samtofastq](/software/samtofastq/) has deleted subobject award [U24DK13851](/awards/U24DK13851/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/software/samtofastq/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK13851/",
        "component": "data coordination"
    },
    "creation_timestamp": "2024-12-03T22:55:29.199292+00:00",
    "description": "Converts a SAM or BAM file to FASTQ. This tool extracts read sequences and base quality scores from the input SAM/BAM file and outputs them in FASTQ format. This can be used by way of a pipe to run BWA MEM on unmapped BAM (uBAM) files efficiently.",
    "lab": {
        "@id": "/labs/pankbase-consortium/",
        "title": "Pankbase Consortium, PanKbase"
    },
    "name": "samtofastq",
    "release_timestamp": "2025-01-10T07:54:04.639726+00:00",
    "schema_version": "5",
    "source_url": "http://broadinstitute.github.io/picard/command-line-overview.html#SamToFastq",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "submitter_comment": "PiCard:A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.",
    "summary": "samtofastq",
    "title": "SamToFastq",
    "used_by": [
        "processing pipelines"
    ],
    "uuid": "da502869-3300-45fc-bcc7-be99e5827b93",
    "versions": [
        "/software-versions/samtofastq-v3.3.0/"
    ]
}