bamsync

{
    "@context": "/terms/",
    "@id": "/software/bamsync/",
    "@type": [
        "Software",
        "Item"
    ],
    "aliases": [
        "kyle-gaulton:software_bamsync"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released software [bamsync](/software/bamsync/) has deleted subobject award [U24DK13851](/awards/U24DK13851/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/software/bamsync/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK13851/",
        "component": "data coordination"
    },
    "creation_timestamp": "2024-12-03T23:53:02.943825+00:00",
    "description": "This utility adds the following information that is lost when realigning BAM files:Copies the \"read fails platform/vendor quality checks\" flag (0x200) from the original BAM;Adds a read group ID to each read based on the read ID, in the format RG:Z:xxxxx.x",
    "lab": {
        "@id": "/labs/pankbase-consortium/",
        "title": "Pankbase Consortium, PanKbase"
    },
    "name": "bamsync",
    "release_timestamp": "2025-01-10T07:54:05.875390+00:00",
    "schema_version": "5",
    "source_url": "https://github.com/broadinstitute/gtex-pipeline/tree/master/rnaseq/bamsync",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "summary": "bamsync",
    "title": "bamsync",
    "used_by": [
        "processing pipelines"
    ],
    "uuid": "8d025e30-9ab4-4c6a-a52d-16a05716f3b9",
    "versions": [
        "/software-versions/bamsync-v0.0.99/"
    ]
}