PKBFI5924NPMC

released
validated
{
    "@context": "/terms/",
    "@id": "/reference-files/PKBFI5924NPMC/",
    "@type": [
        "ReferenceFile",
        "File",
        "Item"
    ],
    "accession": "PKBFI5924NPMC",
    "assembly": "GRCh38",
    "audit": {
        "ERROR": [
            {
                "category": "audit script error",
                "detail": "audit_external_reference_files: NameError(\"name 'get_audit_message' is not defined\")",
                "level": 60,
                "level_name": "ERROR",
                "name": "audit_external_reference_files",
                "path": "/reference-files/PKBFI5924NPMC/"
            }
        ],
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released reference file [PKBFI5924NPMC](/reference-files/PKBFI5924NPMC/) has in progress subobject curated set [PKBDS4208VQMI](/curated-sets/PKBDS4208VQMI/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/reference-files/PKBFI5924NPMC/"
            }
        ]
    },
    "award": {
        "@id": "/awards/R01-DK114650-01A1/"
    },
    "content_type": "transcriptome reference",
    "controlled_access": false,
    "creation_timestamp": "2024-12-12T07:12:17.188950+00:00",
    "description": "Annotation data from EnsDb.Hsapiens.v86 for human genome assembly GRCh38.",
    "external": true,
    "file_format": "bed",
    "file_format_type": "bed12",
    "file_set": "/curated-sets/PKBDS4208VQMI/",
    "file_size": 1,
    "gene_list_for": [],
    "href": "/reference-files/PKBFI5924NPMC/@@download/PKBFI5924NPMC.bed.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/kyle-gaulton/",
        "title": "Kyle Gaulton, UCSD"
    },
    "loci_list_for": [],
    "md5sum": "d41d8cd98f00b204e9800998ecf8427e",
    "release_timestamp": "2025-06-15T05:32:00.210421+00:00",
    "s3_uri": "s3://pankbase-files/2024/12/12/78b6a8ef-adf0-4d9f-9a5e-1892e027a62d/PKBFI5924NPMC.bed.gz",
    "schema_version": "14",
    "source_url": "https://bioconductor.org/packages/EnsDb.Hsapiens.v86",
    "status": "released",
    "submitted_by": {
        "@id": "/users/7e95dcd6-9c35-4082-9c53-09d14c5752be/",
        "title": "Parul Kudtarkar"
    },
    "submitted_file_name": "EnsDb.Hsapiens.v86_GRCh38_annotations.bed",
    "submitter_comment": "This file provides annotations from the EnsDb.Hsapiens.v86 package, derived from Ensembl v86 and compatible with GRCh38.",
    "summary": "GRCh38 GENCODE 40 transcriptome reference",
    "transcriptome_annotation": "GENCODE 40",
    "upload_status": "validated",
    "uuid": "78b6a8ef-adf0-4d9f-9a5e-1892e027a62d"
}