Primary Islet
Title
Primary Islet
Description
A biosample that is directly harvested from a donor as islet cells.
Required
award, cold_ischaemia_time, donors, isolation_center, lab, sample_terms, sources
Identifying Properties
accession, aliases, alternate_accessions, uuid
Highlight properties with matching names, “title” attributes, or an enum of those properties. Matching properties might be non-submittable.
string
The units of time associated with age of the biosample.
array[string]
Lab specific identifiers to reference an object.
linkto
Grant associated with the submission.
array[linkto]
Biological markers that are associated with this sample.
string
HubMap Common Coordinate Framework unique identifier corresponding to the organ, biological structure, and spatial location of the tissue specimen.
string
Cellular sub-pool fraction of the sample. Also known as PKR and sub-library.
number
Duration in hours that the pancreas was kept at a low temperature after removal from the donor, before the transplant or further processing
array[linkto]
The construct library sets of vectors introduced to this sample prior to performing an assay.
string
The date the sample was harvested, dissected or created, depending on the type of the sample.
string
A plain text description of the object.
number
Time taken to enzymatically digest the pancreas tissue during the isolation process
array[linkto]
Ontology term of the disease associated with the biosample.
array[linkto]
Documents that provide additional information (not data file).
array[linkto]
Donor(s) the sample was derived from.
boolean
Biosample is embryonic.
array[string]
Links to the protocol(s) for conducting the assay on Protocols.io.
boolean
Whether the pancreas or its components were manually selected or processed
boolean
Whether functional assays or data are available for the isolated pancreatic islets
boolean
Indicates whether the histology of the islets has been assessed
boolean
Indicates whether the morphology of the islets has been assessed
number
total number of Islet Equivalents (IEQ) obtained from the pancreas
string
Facility or location where the pancreas was isolated
linkto
Lab associated with the submission.
string
The lot identifier provided by the originating lab or vendor.
number
Lower bound of age of the organism at the time of collection of the sample.
array[linkto]
Links to modifications applied to this biosample.
number
The actual multiplicity of infection (MOI) for vectors introduced to this sample. At least one construct library set must be specified in order to specify MOI. This property should capture the actual MOI, and not the targeted MOI.
string
Method of introduction of nucleic acid into the cell.
string
Type of donor from which the pancreas was obtained.
linkto
Links to a biosample that was originated from due to differentiation, dedifferentiation, reprogramming, or the introduction of a genetic modification.
number
ratio of Islet Equivalents to the weight of the pancreas in grams
linkto
Links to a biosample which represents a larger sample from which this sample was taken regardless of whether it is a tissue taken from an organism or smaller slices of a piece of tissue or aliquots of a cell growth.
number
percentage of islets that are trapped or non-functional after the isolation process
integer
The amount of time elapsed since death.
array[linkto]
The biosamples this biosample is pooled from.
number
percentage of viable islet cells remaining after the islets have been shipped
number
Number of hours the pancreas or isolated islets were cultured before being shipped
number
Percentage of viable cells in the pancreas preparation
array[string]
The method by which the tissue was preserved: cryopreservation (slow-freeze) or flash-freezing.
string
The product identifier provided by the originating lab or vendor.
array[string]
Links to the protocol(s) for preparing the samples on Protocols.io.
array[string]
The publication identifiers that provide more information about the object.
array[string]
Percentage of the pancreas preparation that consists of the target cells or tissue type
string
RRID for biosample
array[linkto]
Ontology terms identifying a biosample.
linkto
Links to a larger sample from which this sample was obtained through sorting.
string
Detail for sample sorted into fractions capturing information about sorting.
array[linkto]
The originating lab(s) or vendor(s).
number
The initial quantity of samples obtained.
string
The units used to quantify the amount of samples obtained.
string
Additional information specified by the submitter to be displayed as a comment on the portal.
number
The time that elapsed past the time-point when the construct library sets were introduced.
string
The units of time that elapsed past the point when the construct library sets were introduced.
array[linkto]
A list of treatments applied to the biosample with the purpose of perturbation.
number
Upper bound of age of the organism at the time of collection of the sample.
string
An external resource with additional information.
boolean
Virtual samples are not representing actual physical entities from experiments, but rather capturing metadata about hypothetical samples that the reported analysis results are relevant for.
number
Duration in hours that the pancreas was without blood supply at body temperature before being cooled or transplanted
Supported by National Institutes of Health (NIH) grants U24 DK138515, U24 DK138512
Supplemental funds from the NIH Office of Data Science Strategies
Supplemental funds from the NIH Office of Data Science Strategies