Construct Library Set
Title
Construct Library Set
Description
A file set containing raw data files resulting from sequencing of the library delivered to the sample. For example, a guide RNA library.
Required
award, file_set_type, lab, scope, selection_criteria
Identifying Properties
accession, aliases, alternate_accessions, uuid
Highlight properties with matching names, “title” attributes, or an enum of those properties. Matching properties might be non-submittable.
array[string]
Lab specific identifiers to reference an object.
array[linkto]
Ontological terms for diseases or phenotypes associated with the sequence material cloned in this construct library.
number
The average number of guides targeting each element of interest in the library.
number
The average size of the inserts cloned into vectors in the library.
linkto
Grant associated with the submission.
string
A plain text description of the object.
array[linkto]
Documents that provide additional information (not data file).
string
An identifier in plain text for the specific exon in an expression vector library. The associated gene must be listed in the small_scale_gene_list property.
string
The type or category of this construct library set.
string
The design of guides used in a CRISPR library, paired-guide (pgRNA) or single-guide (sgRNA).
array[linkto]
The files containing sequence material of interest either used for insert design or directly cloned into vectors in this library.
linkto
Lab associated with the submission.
linkto
The large scale list of (>100 genes) this construct library was designed to target.
linkto
A large scale list (>100) of specific chromosomal regions.
string
The lot identifier provided by the originating lab or vendor.
integer
Lower bound of the number of guides targeting each element of interest in the library.
integer
Lower bound of the size of the inserts cloned in vectors in the library.
array[linkto]
List of Open Reading Frame this construct library was designed to target.
string
The product or catalog identifier provided following deposition to addgene.org.
array[string]
The publication identifiers that provide more information about the object.
string
The scope or scale that this construct library is designed to target. If the scope is across gene(s) or loci, these will need to be specified in the genes or loci property. If exon is specified, an exon identifier and the associated gene will need to be listed in exon and genes properties. If tile is specified, a tile identifier, start and stop coordinates, and the associated gene will need to be listed in tile and small_scale_gene_list or large_scale_gene_list properties.
array[string]
The criteria used to select the sequence material cloned into the library.
array[linkto]
The specific, small scale list of (<=100) gene(s) this construct library was designed to target. This property differs from targeted_genes in Measurement Set, which describes genes targeted for binding sites or used for sorting by expression.
array[object]
A small scale (<=100) list of specific chromosomal region(s).
array[linkto]
The originating lab(s) or vendor(s).
string
Additional information specified by the submitter to be displayed as a comment on the portal.
string
An identifier in plain text for the specific targeton in an editing template library. The associated gene must be listed in the small_scale_gene_list property.
object
The coordinates and an identifier in plain text for the specific tile of a protein region cloned in an expression vector library. The associated gene for this protein must be listed in the small_scale_gene_list or large_scale_gene_list property.
string
The tiling modality of guides across elements or loci in a CRISPR library.
integer
Upper bound of the number of guides targeting each element of interest in the library.
integer
Upper bound of the size of the inserts cloned in vectors in the library.
Supported by National Institutes of Health (NIH) grants U24 DK138515, U24 DK138512
Supplemental funds from the NIH Office of Data Science Strategies
Supplemental funds from the NIH Office of Data Science Strategies