islet of Langerhans — PKBSM9864LVAA

{
    "@context": "/terms/",
    "@id": "/primary-islet/PKBSM9864LVAA/",
    "@type": [
        "PrimaryIslet",
        "Biosample",
        "Sample",
        "Item"
    ],
    "accession": "PKBSM9864LVAA",
    "age": "unknown",
    "aliases": [
        "klaus-kaestner:biosample_HPAP-066_scRNAseq_HPAP-066_secondaryBiosample_infected_with_SARS-CoV-2_ISRIB"
    ],
    "audit": {
        "WARNING": [
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM9864LVAA](/primary-islet/PKBSM9864LVAA/) is missing tier 2 field `prep_viability`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM9864LVAA/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM9864LVAA](/primary-islet/PKBSM9864LVAA/) is missing tier 2 field `warm_ischaemia_duration`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM9864LVAA/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM9864LVAA](/primary-islet/PKBSM9864LVAA/) is missing tier 2 field `purity`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM9864LVAA/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM9864LVAA](/primary-islet/PKBSM9864LVAA/) is missing tier 2 field `hand_picked`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM9864LVAA/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM9864LVAA](/primary-islet/PKBSM9864LVAA/) is missing tier 2 field `pre_shipment_culture_time`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM9864LVAA/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM9864LVAA](/primary-islet/PKBSM9864LVAA/) is missing tier 2 field `islet_function_available`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM9864LVAA/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U01DK123594/"
    },
    "classifications": [
        "primary islet"
    ],
    "cold_ischaemia_time": 11.4,
    "creation_timestamp": "2025-05-06T22:26:05.330720+00:00",
    "description": "Islet biosample from human donor SAMN19842595 in the HPAP database, infected_with_SARS-CoV-2_ISRIB",
    "donors": [
        "/human-donors/PKBDO4129ELKU/"
    ],
    "file_sets": [
        {
            "@id": "/analysis-sets/PKBDS4751MAWJ/",
            "accession": "PKBDS4751MAWJ",
            "aliases": [
                "klaus-kaestner:HPAP_scRNAseq_HPAP-066_SRR12831419_infected_with_SARS-CoV-2_ISRIB"
            ],
            "lab": {
                "title": "Klaus Kaestner, UPenn"
            },
            "status": "released",
            "summary": "intermediate analysis of scRNA-seq data"
        },
        {
            "@id": "/measurement-sets/PKBDS9606NKTF/",
            "accession": "PKBDS9606NKTF",
            "aliases": [
                "klaus-kaestner:HPAP_MeasurementSet_scRNAseq_HPAP-066_SRR12831419_infected_with_SARS-CoV-2_ISRIB"
            ],
            "assay_term": {
                "term_name": "single-cell RNA sequencing assay"
            },
            "lab": {
                "title": "Klaus Kaestner, UPenn"
            },
            "status": "released",
            "summary": "single-cell RNA sequencing assay (scRNA-seq)"
        },
        {
            "@id": "/analysis-sets/PKBDS1349YHGQ/",
            "accession": "PKBDS1349YHGQ",
            "aliases": [
                "pankbase-consortium:referenceMap_embedding_140scRNAseqDonors_HPAP-IIDP-Prodo_v3.3"
            ],
            "lab": {
                "title": "Pankbase Consortium, PanKbase"
            },
            "status": "released",
            "summary": "principal analysis of scRNA-seq data"
        }
    ],
    "institutional_certificates": [],
    "isolation_center": "University of Pennsylvania (Upenn)",
    "lab": {
        "@id": "/labs/klaus-kaestner/",
        "title": "Klaus Kaestner, UPenn"
    },
    "multiplexed_in": [],
    "organ_source": "deceased",
    "origin_of": [],
    "originated_from": "/primary-islet/PKBSM0738TUIG/",
    "parts": [],
    "pooled_in": [],
    "release_timestamp": "2025-06-15T03:51:44.528030+00:00",
    "rrid": "RRID:SAMN19842595",
    "sample_terms": [
        {
            "@id": "/sample-terms/UBERON_0000006/",
            "term_name": "islet of Langerhans"
        }
    ],
    "schema_version": "19",
    "sex": "female",
    "sorted_fractions": [],
    "sources": [
        {
            "@id": "/labs/klaus-kaestner/",
            "title": "Klaus Kaestner, UPenn"
        }
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "submitter_comment": "PKBDO4129ELKU",
    "summary": "islet of Langerhans cell, female, Homo sapiens",
    "taxa": "Homo sapiens",
    "uuid": "3cf29896-faec-421c-b60f-d77e2f9efdce",
    "virtual": false
}