islet of Langerhans — PKBSM5224AYPG

{
    "@context": "/terms/",
    "@id": "/primary-islet/PKBSM5224AYPG/",
    "@type": [
        "PrimaryIslet",
        "Biosample",
        "Sample",
        "Item"
    ],
    "accession": "PKBSM5224AYPG",
    "age": "unknown",
    "aliases": [
        "prodo:HP-22234-01_scRNAseq_secondaryBiosample_IFNg+IL1B18hrtreatment"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released treatment [50654f26-3a37-4abc-9288-48abeb69deff](/treatments/50654f26-3a37-4abc-9288-48abeb69deff/) has deleted subobject award [U24DK13851](/awards/U24DK13851/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/treatments/50654f26-3a37-4abc-9288-48abeb69deff/"
            },
            {
                "category": "mismatched status",
                "detail": "Released treatment [9f1b5a3b-f0f1-4508-8a28-2161e9037bca](/treatments/9f1b5a3b-f0f1-4508-8a28-2161e9037bca/) has deleted subobject award [U24DK13851](/awards/U24DK13851/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/treatments/9f1b5a3b-f0f1-4508-8a28-2161e9037bca/"
            }
        ],
        "WARNING": [
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM5224AYPG](/primary-islet/PKBSM5224AYPG/) is missing tier 2 field `rrid`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM5224AYPG/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM5224AYPG](/primary-islet/PKBSM5224AYPG/) is missing tier 2 field `organ_source`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM5224AYPG/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM5224AYPG](/primary-islet/PKBSM5224AYPG/) is missing tier 2 field `prep_viability`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM5224AYPG/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM5224AYPG](/primary-islet/PKBSM5224AYPG/) is missing tier 2 field `warm_ischaemia_duration`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM5224AYPG/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM5224AYPG](/primary-islet/PKBSM5224AYPG/) is missing tier 2 field `purity`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM5224AYPG/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM5224AYPG](/primary-islet/PKBSM5224AYPG/) is missing tier 2 field `hand_picked`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM5224AYPG/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM5224AYPG](/primary-islet/PKBSM5224AYPG/) is missing tier 2 field `pre_shipment_culture_time`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM5224AYPG/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM5224AYPG](/primary-islet/PKBSM5224AYPG/) is missing tier 2 field `islet_function_available`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM5224AYPG/"
            }
        ]
    },
    "award": {
        "@id": "/awards/PSEUDO2/"
    },
    "classifications": [
        "primary islet"
    ],
    "cold_ischaemia_time": 8.17,
    "creation_timestamp": "2025-01-08T03:06:01.047182+00:00",
    "description": "Islet biosample from human donor HP-22234-01, IFNg+IL1B 18hr treatment",
    "donors": [
        "/human-donors/PKBDO5181VXNQ/"
    ],
    "file_sets": [
        {
            "@id": "/measurement-sets/PKBDS7962NZHF/",
            "accession": "PKBDS7962NZHF",
            "aliases": [
                "prodo:HP-22234-01_scRNAseq_assay_IFNg+IL1B18hrtreatment"
            ],
            "assay_term": {
                "term_name": "single-cell RNA sequencing assay"
            },
            "lab": {
                "title": "Prodo Laboratories, PRODO"
            },
            "status": "released",
            "summary": "single-cell RNA sequencing assay (scRNA-seq)"
        }
    ],
    "institutional_certificates": [],
    "isolation_center": "Prodo",
    "lab": {
        "@id": "/labs/prodo-laboratories/",
        "title": "Prodo Laboratories, PRODO"
    },
    "multiplexed_in": [],
    "origin_of": [],
    "originated_from": "/primary-islet/PKBSM8613OVTV/",
    "parts": [],
    "pooled_in": [],
    "release_timestamp": "2025-01-10T01:50:35.514606+00:00",
    "sample_terms": [
        {
            "@id": "/sample-terms/UBERON_0000006/",
            "term_name": "islet of Langerhans"
        }
    ],
    "schema_version": "19",
    "sex": "male",
    "sorted_fractions": [],
    "sources": [
        {
            "@id": "/labs/prodo-laboratories/",
            "title": "Prodo Laboratories, PRODO"
        }
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/7e95dcd6-9c35-4082-9c53-09d14c5752be/",
        "title": "Parul Kudtarkar"
    },
    "submitter_comment": "From study GSE251730",
    "summary": "islet of Langerhans cell, male, Homo sapiens depleted of Interferon-gamma, Interleukin-1 beta",
    "taxa": "Homo sapiens",
    "treatments": [
        {
            "@id": "/treatments/9f1b5a3b-f0f1-4508-8a28-2161e9037bca/",
            "purpose": "stimulation",
            "status": "released",
            "summary": "Depletion of Interferon-gamma",
            "treatment_type": "protein"
        },
        {
            "@id": "/treatments/50654f26-3a37-4abc-9288-48abeb69deff/",
            "purpose": "stimulation",
            "status": "released",
            "summary": "Depletion of Interleukin-1 beta",
            "treatment_type": "protein"
        }
    ],
    "uuid": "f85e160a-512d-4085-a6fb-81f679fc0ba6",
    "virtual": false
}