islet of Langerhans — PKBSM3422VIKK

{
    "@context": "/terms/",
    "@id": "/primary-islet/PKBSM3422VIKK/",
    "@type": [
        "PrimaryIslet",
        "Biosample",
        "Sample",
        "Item"
    ],
    "accession": "PKBSM3422VIKK",
    "age": "24",
    "age_units": "year",
    "aliases": [
        "klaus-kaestner:biosample_HPAP-055"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "missing sample",
                "detail": "Primary islet [PKBSM3422VIKK](/primary-islet/PKBSM3422VIKK/) has only 1 child sample [PKBSM6120HOYN](/primary-cells/PKBSM6120HOYN/) in `parts`. Parent samples are expected to have multiple child samples.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_parent_sample_with_singular_child",
                "path": "/primary-islet/PKBSM3422VIKK/"
            }
        ],
        "WARNING": [
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM3422VIKK](/primary-islet/PKBSM3422VIKK/) is missing tier 2 field `warm_ischaemia_duration`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM3422VIKK/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U01DK123594/"
    },
    "classifications": [
        "primary islet"
    ],
    "cold_ischaemia_time": 8.22,
    "creation_timestamp": "2024-12-04T20:07:23.272212+00:00",
    "date_obtained": "2020-01-30",
    "description": "Islet biosample from human donor SAMN19776485 in the HPAP database",
    "donors": [
        "/human-donors/PKBDO1384BFXE/"
    ],
    "file_sets": [
        {
            "@id": "/measurement-sets/PKBDS4292WWQK/",
            "accession": "PKBDS4292WWQK",
            "aliases": [
                "klaus-kaestner:scRNAseq_IsletCells_HPAP-055"
            ],
            "assay_term": {
                "term_name": "single-cell RNA sequencing assay"
            },
            "lab": {
                "title": "Klaus Kaestner, UPenn"
            },
            "status": "released",
            "summary": "single-cell RNA sequencing assay (scRNA-seq)"
        },
        {
            "@id": "/measurement-sets/PKBDS4712MFGY/",
            "accession": "PKBDS4712MFGY",
            "aliases": [
                "klaus-kaestner:scATAC_isletCells_HPAP-055"
            ],
            "assay_term": {
                "term_name": "single-cell ATAC-seq"
            },
            "lab": {
                "title": "Klaus Kaestner, UPenn"
            },
            "status": "released",
            "summary": "single-cell ATAC-seq (snATAC-seq)"
        },
        {
            "@id": "/analysis-sets/PKBDS0470WCHR/",
            "accession": "PKBDS0470WCHR",
            "aliases": [
                "kyle-gaulton:embedding_islet_scATAC"
            ],
            "lab": {
                "title": "Pankbase Consortium, PanKbase"
            },
            "status": "released",
            "summary": "principal analysis of snATAC-seq data"
        },
        {
            "@id": "/analysis-sets/PKBDS9039BKEI/",
            "accession": "PKBDS9039BKEI",
            "aliases": [
                "klaus-kaestner:scATAC_isletCells_AnalysisSet_HPAP-055"
            ],
            "lab": {
                "title": "Pankbase Consortium, PanKbase"
            },
            "status": "released",
            "summary": "intermediate analysis of snATAC-seq data"
        }
    ],
    "hand_picked": true,
    "institutional_certificates": [],
    "islet_function_available": true,
    "islet_histology": true,
    "islet_morphology": true,
    "islet_yield": 226101,
    "isolation_center": "University of Pennsylvania (Upenn)",
    "lab": {
        "@id": "/labs/klaus-kaestner/",
        "title": "Klaus Kaestner, UPenn"
    },
    "lower_bound_age": 24,
    "lower_bound_age_in_hours": 210240,
    "multiplexed_in": [],
    "organ_source": "deceased",
    "origin_of": [],
    "pancreas_weight": 3544,
    "parts": [
        "/primary-cells/PKBSM6120HOYN/"
    ],
    "pooled_in": [],
    "pre_shipment_culture_time": 96,
    "prep_viability": 90,
    "preservation_method": [
        "UW"
    ],
    "purity": [
        "90",
        "50",
        "15"
    ],
    "release_timestamp": "2025-01-10T01:50:02.645065+00:00",
    "rrid": "RRID:SAMN19776485",
    "sample_terms": [
        {
            "@id": "/sample-terms/UBERON_0000006/",
            "term_name": "islet of Langerhans"
        }
    ],
    "schema_version": "19",
    "sex": "male",
    "sorted_fractions": [],
    "sources": [
        {
            "@id": "/labs/klaus-kaestner/",
            "title": "Klaus Kaestner, UPenn"
        }
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "submitter_comment": "PKBDO1384BFXE",
    "summary": "islet of Langerhans cell, male, Homo sapiens",
    "taxa": "Homo sapiens",
    "upper_bound_age": 24,
    "upper_bound_age_in_hours": 210240,
    "uuid": "7172cd6c-3c2d-4735-86a4-abcd50a6e866",
    "virtual": false
}