{
"@context": "/terms/",
"@id": "/primary-islet/PKBSM1296MVWE/",
"@type": [
"PrimaryIslet",
"Biosample",
"Sample",
"Item"
],
"accession": "PKBSM1296MVWE",
"age": "unknown",
"aliases": [
"prodo:HP-19073-01_scRNAseq_initialBiosample"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sample",
"detail": "Primary islet [PKBSM1296MVWE](/primary-islet/PKBSM1296MVWE/) has only 1 child sample [PKBSM4054SHAI](/primary-islet/PKBSM4054SHAI/) in `origin_of`. Parent samples are expected to have multiple child samples.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_parent_sample_with_singular_child",
"path": "/primary-islet/PKBSM1296MVWE/"
}
],
"WARNING": [
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBSM1296MVWE](/primary-islet/PKBSM1296MVWE/) is missing tier 2 field `rrid`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_desired_fields",
"path": "/primary-islet/PKBSM1296MVWE/"
},
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBSM1296MVWE](/primary-islet/PKBSM1296MVWE/) is missing tier 2 field `prep_viability`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_desired_fields",
"path": "/primary-islet/PKBSM1296MVWE/"
},
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBSM1296MVWE](/primary-islet/PKBSM1296MVWE/) is missing tier 2 field `warm_ischaemia_duration`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_desired_fields",
"path": "/primary-islet/PKBSM1296MVWE/"
},
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBSM1296MVWE](/primary-islet/PKBSM1296MVWE/) is missing tier 2 field `purity`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_desired_fields",
"path": "/primary-islet/PKBSM1296MVWE/"
},
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBSM1296MVWE](/primary-islet/PKBSM1296MVWE/) is missing tier 2 field `hand_picked`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_desired_fields",
"path": "/primary-islet/PKBSM1296MVWE/"
},
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBSM1296MVWE](/primary-islet/PKBSM1296MVWE/) is missing tier 2 field `pre_shipment_culture_time`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_desired_fields",
"path": "/primary-islet/PKBSM1296MVWE/"
}
]
},
"award": {
"@id": "/awards/Prodo/"
},
"classifications": [
"primary islet"
],
"cold_ischaemia_time": 6.87,
"creation_timestamp": "2024-12-20T19:37:46.738446+00:00",
"date_obtained": "2019-03-14",
"description": "Islet biosample from human donor HP-19073-01 in the Prodo database",
"donors": [
{
"@id": "/human-donors/PKBDO3625QXGY/",
"accession": "PKBDO3625QXGY",
"age": 50,
"gender": "Male",
"summary": "PKBDO3625QXGY",
"taxa": "Homo sapiens"
}
],
"file_sets": [],
"institutional_certificates": [],
"islet_function_available": false,
"islet_histology": false,
"islet_morphology": false,
"isolation_center": "Prodo",
"lab": {
"@id": "/labs/prodo-laboratories/"
},
"multiplexed_in": [],
"organ_source": "deceased",
"origin_of": [
"/primary-islet/PKBSM4054SHAI/"
],
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-01-10T01:50:44.536814+00:00",
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000006/",
"term_name": "islet of Langerhans"
}
],
"schema_version": "21",
"sex": "Male",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/prodo-laboratories/"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
"title": "Ying Sun"
},
"submitter_comment": "From donor PKBDO3625QXGY",
"summary": "islet of Langerhans cell, Male, Homo sapiens",
"uuid": "a01eb4b4-6e7a-4d93-b31b-676274fae415",
"virtual": false
}