islet of Langerhans — PKBSM1147JSQB

{
    "@context": "/terms/",
    "@id": "/primary-islet/PKBSM1147JSQB/",
    "@type": [
        "PrimaryIslet",
        "Biosample",
        "Sample",
        "Item"
    ],
    "accession": "PKBSM1147JSQB",
    "age": "unknown",
    "aliases": [
        "joyce-niland:SAMN15314807_scRNAseq_secondaryBiosample_infected_with_SARS-CoV-2"
    ],
    "audit": {
        "WARNING": [
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM1147JSQB](/primary-islet/PKBSM1147JSQB/) is missing tier 2 field `rrid`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM1147JSQB/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM1147JSQB](/primary-islet/PKBSM1147JSQB/) is missing tier 2 field `organ_source`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM1147JSQB/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM1147JSQB](/primary-islet/PKBSM1147JSQB/) is missing tier 2 field `prep_viability`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM1147JSQB/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM1147JSQB](/primary-islet/PKBSM1147JSQB/) is missing tier 2 field `warm_ischaemia_duration`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM1147JSQB/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM1147JSQB](/primary-islet/PKBSM1147JSQB/) is missing tier 2 field `purity`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM1147JSQB/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM1147JSQB](/primary-islet/PKBSM1147JSQB/) is missing tier 2 field `hand_picked`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM1147JSQB/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM1147JSQB](/primary-islet/PKBSM1147JSQB/) is missing tier 2 field `pre_shipment_culture_time`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM1147JSQB/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM1147JSQB](/primary-islet/PKBSM1147JSQB/) is missing tier 2 field `islet_function_available`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM1147JSQB/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK098085/"
    },
    "classifications": [
        "primary islet"
    ],
    "cold_ischaemia_time": -999,
    "creation_timestamp": "2025-05-06T22:31:53.071290+00:00",
    "description": "Islet biosample from human donor SAMN15314807 in the IIDP database, infected_with_SARS-CoV-2",
    "donors": [
        "/human-donors/PKBDO7691YWQE/"
    ],
    "file_sets": [
        {
            "@id": "/analysis-sets/PKBDS0269YCWP/",
            "accession": "PKBDS0269YCWP",
            "aliases": [
                "joyce-niland:Prodo_scRNAseq_SRR12831416_infected_with_SARS-CoV-2"
            ],
            "lab": {
                "title": "Joyce Niland, CoH"
            },
            "status": "released",
            "summary": "intermediate analysis of scRNA-seq data"
        },
        {
            "@id": "/measurement-sets/PKBDS2009ACIW/",
            "accession": "PKBDS2009ACIW",
            "aliases": [
                "joyce-niland:Prodo_MeasurementSet_scRNAseq_SRR12831416_infected_with_SARS-CoV-2"
            ],
            "assay_term": {
                "term_name": "single-cell RNA sequencing assay"
            },
            "lab": {
                "title": "Joyce Niland, CoH"
            },
            "status": "released",
            "summary": "single-cell RNA sequencing assay (scRNA-seq)"
        },
        {
            "@id": "/analysis-sets/PKBDS1349YHGQ/",
            "accession": "PKBDS1349YHGQ",
            "aliases": [
                "pankbase-consortium:referenceMap_embedding_140scRNAseqDonors_HPAP-IIDP-Prodo_v3.3"
            ],
            "lab": {
                "title": "Pankbase Consortium, PanKbase"
            },
            "status": "in progress",
            "summary": "principal analysis of scRNA-seq data"
        }
    ],
    "institutional_certificates": [],
    "isolation_center": "Integrated Islet Distribution Program (IIDP)",
    "lab": {
        "@id": "/labs/joyce-niland/",
        "title": "Joyce Niland, CoH"
    },
    "multiplexed_in": [],
    "origin_of": [],
    "originated_from": "/primary-islet/PKBSM0318IANY/",
    "parts": [],
    "pooled_in": [],
    "release_timestamp": "2025-06-15T03:51:43.794923+00:00",
    "sample_terms": [
        {
            "@id": "/sample-terms/UBERON_0000006/",
            "term_name": "islet of Langerhans"
        }
    ],
    "schema_version": "19",
    "sex": "male",
    "sorted_fractions": [],
    "sources": [
        {
            "@id": "/labs/joyce-niland/",
            "title": "Joyce Niland, CoH"
        }
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "summary": "islet of Langerhans cell, male, Homo sapiens",
    "taxa": "Homo sapiens",
    "uuid": "c282fe22-4a57-4755-ad18-09ea90f515ef",
    "virtual": false
}