islet of Langerhans — PKBSM0879NDPN

{
    "@context": "/terms/",
    "@id": "/primary-islet/PKBSM0879NDPN/",
    "@type": [
        "PrimaryIslet",
        "Biosample",
        "Sample",
        "Item"
    ],
    "accession": "PKBSM0879NDPN",
    "age": "unknown",
    "aliases": [
        "joyce-niland:SAMN12500521_bulkIslet_secondaryBiosample_ctrlGSE192541"
    ],
    "audit": {
        "WARNING": [
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM0879NDPN](/primary-islet/PKBSM0879NDPN/) is missing tier 2 field `rrid`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM0879NDPN/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM0879NDPN](/primary-islet/PKBSM0879NDPN/) is missing tier 2 field `organ_source`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM0879NDPN/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM0879NDPN](/primary-islet/PKBSM0879NDPN/) is missing tier 2 field `prep_viability`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM0879NDPN/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM0879NDPN](/primary-islet/PKBSM0879NDPN/) is missing tier 2 field `warm_ischaemia_duration`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM0879NDPN/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM0879NDPN](/primary-islet/PKBSM0879NDPN/) is missing tier 2 field `hand_picked`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM0879NDPN/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM0879NDPN](/primary-islet/PKBSM0879NDPN/) is missing tier 2 field `pre_shipment_culture_time`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM0879NDPN/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM0879NDPN](/primary-islet/PKBSM0879NDPN/) is missing tier 2 field `islet_function_available`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM0879NDPN/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK098085/"
    },
    "biosample_type": "Post-shipment",
    "classifications": [
        "primary islet"
    ],
    "cold_ischaemia_time": -999,
    "creation_timestamp": "2025-10-17T17:25:43.717043+00:00",
    "description": "Post-shipment treatment of islet biosample from human donor SAMN12500521, mock digestion for 0.5hr",
    "donors": [
        {
            "@id": "/human-donors/PKBDO6564RZRU/",
            "accession": "PKBDO6564RZRU",
            "age": 52,
            "gender": "Male",
            "summary": "PKBDO6564RZRU",
            "taxa": "Homo sapiens"
        }
    ],
    "file_sets": [
        {
            "@id": "/measurement-sets/PKBDS8397QHIA/",
            "accession": "PKBDS8397QHIA",
            "aliases": [
                "pankbase-consortium:bulkIslets_GSE192541_SAMN12500521_ctrl_MeasurementSet"
            ],
            "assay_term": {
                "term_name": "bulk RNA-seq assay"
            },
            "lab": {},
            "status": "released"
        },
        {
            "@id": "/analysis-sets/PKBDS3886BWFH/",
            "accession": "PKBDS3886BWFH",
            "aliases": [
                "pankbase-consortium:bulkIslets_GSE192541_SAMN12500521_ctrl_AnalysisSet"
            ],
            "lab": {},
            "status": "released"
        }
    ],
    "institutional_certificates": [],
    "isolation_center": "Wisconsin - University of Wisconsin-Madison",
    "lab": {
        "@id": "/labs/joyce-niland/"
    },
    "multiplexed_in": [],
    "origin_of": [],
    "originated_from": "/primary-islet/PKBSM1392FZSC/",
    "parts": [],
    "pooled_in": [],
    "purity": [
        "-"
    ],
    "release_timestamp": "2025-10-27T19:40:53.494198+00:00",
    "sample_terms": [
        {
            "@id": "/sample-terms/UBERON_0000006/",
            "term_name": "islet of Langerhans"
        }
    ],
    "schema_version": "19",
    "sex": "Male",
    "sorted_fractions": [],
    "sources": [
        {
            "@id": "/labs/joyce-niland/"
        }
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "submitter_comment": "From GEO record GSE192541",
    "summary": "islet of Langerhans cell, Male, Homo sapiens treated with 0 μM no treatment",
    "treatments": [
        {
            "@id": "/treatments/d20144fb-704c-4d62-b01a-3f2526d5f6ab/",
            "purpose": "control",
            "status": "released",
            "summary": "Treatment of 0 μM no treatment",
            "treatment_type": "chemical"
        }
    ],
    "uuid": "121dd47b-e733-4e20-8214-4afa7b0b8f9c",
    "virtual": false
}