islet of Langerhans — PKBSM0828SIXA

{
    "@context": "/terms/",
    "@id": "/primary-islet/PKBSM0828SIXA/",
    "@type": [
        "PrimaryIslet",
        "Biosample",
        "Sample",
        "Item"
    ],
    "accession": "PKBSM0828SIXA",
    "age": "35",
    "age_units": "year",
    "aliases": [
        "klaus-kaestner:biosample_HPAP-075"
    ],
    "audit": {
        "WARNING": [
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBSM0828SIXA](/primary-islet/PKBSM0828SIXA/) is missing tier 2 field `warm_ischaemia_duration`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/primary-islet/PKBSM0828SIXA/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U01DK123594/"
    },
    "classifications": [
        "primary islet"
    ],
    "cold_ischaemia_time": 11.42,
    "creation_timestamp": "2024-12-04T20:07:56.045920+00:00",
    "date_obtained": "2020-11-22",
    "description": "Islet biosample from human donor SAMN19842604 in the HPAP database",
    "donors": [
        "/human-donors/PKBDO3766WPNY/"
    ],
    "file_sets": [
        {
            "@id": "/measurement-sets/PKBDS4823EHZA/",
            "accession": "PKBDS4823EHZA",
            "aliases": [
                "klaus-kaestner:scATAC_isletCells_HPAP-075"
            ],
            "assay_term": {
                "term_name": "single-cell ATAC-seq"
            },
            "lab": {
                "title": "Klaus Kaestner, UPenn"
            },
            "status": "released",
            "summary": "single-cell ATAC-seq (snATAC-seq)"
        },
        {
            "@id": "/measurement-sets/PKBDS0437ICAT/",
            "accession": "PKBDS0437ICAT",
            "aliases": [
                "klaus-kaestner:scRNAseq_IsletCells_HPAP-075"
            ],
            "assay_term": {
                "term_name": "single-cell RNA sequencing assay"
            },
            "lab": {
                "title": "Klaus Kaestner, UPenn"
            },
            "status": "released",
            "summary": "single-cell RNA sequencing assay (scRNA-seq)"
        },
        {
            "@id": "/analysis-sets/PKBDS0470WCHR/",
            "accession": "PKBDS0470WCHR",
            "aliases": [
                "kyle-gaulton:embedding_islet_scATAC"
            ],
            "lab": {
                "title": "Pankbase Consortium, PanKbase"
            },
            "status": "released",
            "summary": "principal analysis of snATAC-seq data"
        },
        {
            "@id": "/analysis-sets/PKBDS6309EITZ/",
            "accession": "PKBDS6309EITZ",
            "aliases": [
                "klaus-kaestner:scATAC_isletCells_AnalysisSet_HPAP-075"
            ],
            "lab": {
                "title": "Pankbase Consortium, PanKbase"
            },
            "status": "released",
            "summary": "intermediate analysis of snATAC-seq data"
        }
    ],
    "hand_picked": true,
    "institutional_certificates": [],
    "islet_function_available": true,
    "islet_histology": true,
    "islet_morphology": true,
    "islet_yield": 442136,
    "isolation_center": "University of Pennsylvania (Upenn)",
    "lab": {
        "@id": "/labs/klaus-kaestner/",
        "title": "Klaus Kaestner, UPenn"
    },
    "lower_bound_age": 35,
    "lower_bound_age_in_hours": 306600,
    "multiplexed_in": [],
    "organ_source": "deceased",
    "origin_of": [],
    "pancreas_weight": 3872,
    "parts": [
        "/primary-cells/PKBSM8881IHNX/",
        "/primary-cells/PKBSM6001XGEK/"
    ],
    "pooled_in": [],
    "pre_shipment_culture_time": 48,
    "prep_viability": 91,
    "preservation_method": [
        "UW"
    ],
    "purity": [
        "90",
        "30"
    ],
    "release_timestamp": "2025-01-10T01:50:09.741205+00:00",
    "rrid": "RRID:SAMN19842604",
    "sample_terms": [
        {
            "@id": "/sample-terms/UBERON_0000006/",
            "term_name": "islet of Langerhans"
        }
    ],
    "schema_version": "19",
    "sex": "male",
    "sorted_fractions": [],
    "sources": [
        {
            "@id": "/labs/klaus-kaestner/",
            "title": "Klaus Kaestner, UPenn"
        }
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "submitter_comment": "PKBDO3766WPNY",
    "summary": "islet of Langerhans cell, male, Homo sapiens",
    "taxa": "Homo sapiens",
    "upper_bound_age": 35,
    "upper_bound_age_in_hours": 306600,
    "uuid": "57c7d22d-6118-4dd2-ac95-05637e875eb6",
    "virtual": false
}