{
"@context": "/terms/",
"@id": "/primary-cells/PKBSM7378CQFK/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "PKBSM7378CQFK",
"age": "unknown",
"aliases": [
"klaus-kaestner:pancreaticExocrineCell_HPAP-097"
],
"audit": {
"ERROR": [
{
"category": "inconsistent parent sample",
"detail": "Primary cell [PKBSM7378CQFK](/primary-cells/PKBSM7378CQFK/) has metadata properties (`islet_function_available`, `rrid`, `islet_histology`, `pancreas_weight`, `sample_terms`, `islet_yield`, `isolation_center`, `lower_bound_age`, `hand_picked`, `cold_ischaemia_time`, `purity`, `age_units`, `islet_morphology`, `upper_bound_age`, `preservation_method`, `prep_viability`, `organ_source`) inconsistent with its associated parent sample [PKBSM6113VWVP](/primary-islet/PKBSM6113VWVP/). Samples that are sorted from or part of a parent sample are expected to share most of the parent's metadata properties.",
"level": 60,
"level_name": "ERROR",
"name": "audit_sample_sorted_from_parent_child_check",
"path": "/primary-cells/PKBSM7378CQFK/"
}
],
"WARNING": [
{
"category": "missing age",
"detail": "Primary cell [PKBSM7378CQFK](/primary-cells/PKBSM7378CQFK/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/primary-cells/PKBSM7378CQFK/"
}
]
},
"award": {
"@id": "/awards/U01DK123594/"
},
"classifications": [
"primary cell"
],
"creation_timestamp": "2024-12-04T21:38:08.867094+00:00",
"description": "Pancreatic exocrine cell of islet biosample from human donor SAMN22562808 in the HPAP database HPAP-097",
"donors": [
"/human-donors/PKBDO1701BQMY/"
],
"file_sets": [
{
"@id": "/analysis-sets/PKBDS2831NHRN/",
"accession": "PKBDS2831NHRN",
"aliases": [
"klaus-kaestner:pancreaticExocrineCell_AnalysisSet_RNAseq_HPAP-097"
],
"lab": {
"title": "Klaus Kaestner, UPenn"
},
"status": "released",
"summary": "intermediate analysis of RNA-seq data"
},
{
"@id": "/measurement-sets/PKBDS7621SMFT/",
"accession": "PKBDS7621SMFT",
"aliases": [
"klaus-kaestner:pancreaticExocrineCell_MeasurementSet_RNAseq_HPAP-097"
],
"assay_term": {
"term_name": "bulk RNA-seq assay"
},
"lab": {
"title": "Klaus Kaestner, UPenn"
},
"status": "released",
"summary": "bulk RNA-seq assay (RNA-seq)"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/klaus-kaestner/",
"title": "Klaus Kaestner, UPenn"
},
"multiplexed_in": [],
"origin_of": [],
"part_of": "/primary-islet/PKBSM6113VWVP/",
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-01-10T01:49:45.677113+00:00",
"sample_terms": [
{
"@id": "/sample-terms/CL_0000152/",
"term_name": "exocrine cell"
}
],
"schema_version": "19",
"sex": "female",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/klaus-kaestner/",
"title": "Klaus Kaestner, UPenn"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
"title": "Ying Sun"
},
"summary": "exocrine cell, female, Homo sapiens",
"taxa": "Homo sapiens",
"uuid": "0168956f-c8ed-4450-94ff-1515fe15f222",
"virtual": false
}