{
"@context": "/terms/",
"@id": "/primary-cells/PKBSM1070FHCO/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "PKBSM1070FHCO",
"age": "unknown",
"audit": {
"ERROR": [
{
"category": "inconsistent parent sample",
"detail": "Primary cell [PKBSM1070FHCO](/primary-cells/PKBSM1070FHCO/) is virtual and has a linked sample [PKBSM0738TUIG](/primary-islet/PKBSM0738TUIG/) that is not virtual. Non-virtual samples are expected to be derived from non-virtual samples.",
"level": 60,
"level_name": "ERROR",
"name": "audit_non_virtual_sample_linked_to_virtual_sample",
"path": "/primary-cells/PKBSM1070FHCO/"
},
{
"category": "inconsistent parent sample",
"detail": "Primary cell [PKBSM1070FHCO](/primary-cells/PKBSM1070FHCO/) has metadata properties (`islet_morphology`, `age_units`, `prep_viability`, `islet_function_available`, `rrid`, `islet_yield`, `sample_terms`, `cold_ischaemia_time`, `lower_bound_age`, `upper_bound_age`, `pancreas_weight`, `virtual`, `preservation_method`, `islet_histology`, `hand_picked`, `organ_source`, `purity`, `isolation_center`) inconsistent with its associated parent sample [PKBSM0738TUIG](/primary-islet/PKBSM0738TUIG/). Samples that are sorted from or part of a parent sample are expected to share most of the parent's metadata properties.",
"level": 60,
"level_name": "ERROR",
"name": "audit_sample_sorted_from_parent_child_check",
"path": "/primary-cells/PKBSM1070FHCO/"
}
],
"INTERNAL_ACTION": [
{
"category": "upgrade failure",
"detail": "VersionTooHigh('Award', '6', '5') upgrading from '6' to '5'",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_schema",
"path": "/awards/U01DK123594/"
}
],
"WARNING": [
{
"category": "missing age",
"detail": "Primary cell [PKBSM1070FHCO](/primary-cells/PKBSM1070FHCO/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/primary-cells/PKBSM1070FHCO/"
}
]
},
"award": {
"@id": "/awards/U01DK123594/"
},
"classifications": [
"primary cell"
],
"creation_timestamp": "2024-12-04T20:18:58.000071+00:00",
"description": "test",
"donors": [
{
"@id": "/human-donors/PKBDO4129ELKU/",
"accession": "PKBDO4129ELKU",
"age": 58,
"gender": "female",
"summary": "PKBDO4129ELKU",
"taxa": "Homo sapiens"
}
],
"file_sets": [],
"institutional_certificates": [],
"lab": {
"@id": "/labs/klaus-kaestner/",
"title": "Klaus Kaestner, UPenn"
},
"multiplexed_in": [],
"origin_of": [],
"part_of": "/primary-islet/PKBSM0738TUIG/",
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-01-10T01:49:48.755011+00:00",
"sample_terms": [
{
"@id": "/sample-terms/CL_0000171/",
"term_name": "pancreatic A cell"
}
],
"schema_version": "19",
"sex": "female",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/klaus-kaestner/",
"title": "Klaus Kaestner, UPenn"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/7e95dcd6-9c35-4082-9c53-09d14c5752be/",
"title": "Parul Kudtarkar"
},
"summary": "virtual pancreatic A cell, female, Homo sapiens",
"taxa": "Homo sapiens",
"uuid": "7d086780-d31b-4d19-9ec3-cc3a31d10c5f",
"virtual": true
}