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Pankbase Consortium, PanKbase
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data coordination
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workflow.@id
/workflows/PKBWF6231IPHV/
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6 items
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Workflow
/analysis-steps/PKBWF6231IPHV-bamsync-optional-step/
kyle-gaulton:workflow_RNAseqPipelineForGTExConsortium_step3_syncBAMs
/awards/U24DK13851/
/labs/pankbase-consortium/
released
e2b77b80-f4ed-45bc-b2fd-ee7751570d5f
RNAseq GTEx pipeline bamsync optional step
e2b77b80-f4ed-45bc-b2fd-ee7751570d5f
/workflows/PKBWF6231IPHV/
/analysis-steps/PKBWF6231IPHV-rsemtranscript-quantification-step/
kyle-gaulton:workflow_RNAseqPipelineForGTExConsortium_step6_RSEM
/awards/U24DK13851/
/labs/pankbase-consortium/
released
cb85e0ba-cf1a-4319-bd1d-a1fa2bae05f8
RNAseq GTEx pipeline RSEM transcript quantification step
cb85e0ba-cf1a-4319-bd1d-a1fa2bae05f8
/workflows/PKBWF6231IPHV/
/analysis-steps/PKBWF6231IPHV-picard-mark-duplicates-step/
kyle-gaulton:workflow_RNAseqPipelineForGTExConsortium_step4_PicardMarkDuplicates
/awards/U24DK13851/
/labs/pankbase-consortium/
released
52981da7-dfea-4595-84d5-7373b07f8361
RNAseq GTEx pipeline Picard mark duplicates step
52981da7-dfea-4595-84d5-7373b07f8361
/workflows/PKBWF6231IPHV/
/analysis-steps/PKBWF6231IPHV-rnaseqc-quality-control-step/
kyle-gaulton:workflow_RNAseqPipelineForGTExConsortium_step5_RNA-SeQC
/awards/U24DK13851/
/labs/pankbase-consortium/
released
1f57a4a1-c10f-49e3-98d1-4a75ce0774a3
RNAseq GTEx pipeline quality control step
1f57a4a1-c10f-49e3-98d1-4a75ce0774a3
/workflows/PKBWF6231IPHV/
/analysis-steps/PKBWF6231IPHV-star-alignment-step/
kyle-gaulton:workflow_RNAseqPipelineForGTExConsortium_step2_STAR
/awards/U24DK13851/
/labs/pankbase-consortium/
released
072c46a0-4ef2-402f-b8f0-a00517e0cdf8
RNAseq GTEx pipeline STAR alignment step
072c46a0-4ef2-402f-b8f0-a00517e0cdf8
/workflows/PKBWF6231IPHV/
/analysis-steps/PKBWF6231IPHV-bam-to-fastq-conversion-step/
kyle-gaulton:workflow_RNAseqPipelineForGTExConsortium_step1_BamToFastq
/awards/U24DK13851/
/labs/pankbase-consortium/
released
03074c1c-1247-45e9-830a-ac75a691c6fc
RNAseq GTEx pipeline BAM to FASTQ conversion step
03074c1c-1247-45e9-830a-ac75a691c6fc
/workflows/PKBWF6231IPHV/