PKBWF6231IPHV

/analysis-steps/PKBWF6231IPHV-bam-to-fastq-conversion-step/, /analysis-steps/PKBWF6231IPHV-bamsync-optional-step/, /analysis-steps/PKBWF6231IPHV-picard-mark-duplicates-step/, /analysis-steps/PKBWF6231IPHV-rnaseqc-quality-control-step/, /analysis-steps/PKBWF6231IPHV-rsemtranscript-quantification-step/, /analysis-steps/PKBWF6231IPHV-star-alignment-step/

RNA-seq pipeline for the GTEx Consortium

https://github.com/broadinstitute/gtex-pipeline/tree/master/rnaseq

released

https://hub.docker.com/r/broadinstitute/gtex_rnaseq/

10

PKBWF1943AUOL

snATAC pipeline

https://github.com/PanKbase-pipelines/HPAP-scATAC-seq

released

https://github.com/PanKbase-pipelines/HPAP-scATAC-seq

PKBWF9734QUEJ

/analysis-steps/PKBWF9734QUEJ-dynamic-perifusion-trait-analysis-step/

Dynamic Perifusion Data Analysis Pipeline

https://github.com/dmcbffeng/DynamicPerifusionTraits

released

https://github.com/dmcbffeng/DynamicPerifusionTraits

1

PKBWF9623SLYX

NextFlow pipeline for detecting doublets in 10X sn/scRNA-seq data

https://github.com/ParkerLab/Multiome-Doublet-Detection-NextFlow

released

https://github.com/ParkerLab/Multiome-Doublet-Detection-NextFlow

PKBWF7216YNOL

NextFlow pipeline for 10X sn/scRNA-seq data processing

https://github.com/ParkerLab/snRNAseq-NextFlow

released

https://github.com/ParkerLab/snRNAseq-NextFlow