PKBFI2503EGQY

{
    "@context": "/terms/",
    "@id": "/matrix-files/PKBFI2503EGQY/",
    "@type": [
        "MatrixFile",
        "File",
        "Item"
    ],
    "accession": "PKBFI2503EGQY",
    "aliases": [
        "kyle-gaulton:embedding_islet_scATAC_matrixFile_HPAP-099"
    ],
    "audit": {
        "ERROR": [
            {
                "category": "upload status not validated",
                "detail": "Matrix file [PKBFI2503EGQY](/matrix-files/PKBFI2503EGQY/) has `upload_status` invalidated. Files are expected to be validated.",
                "level": 60,
                "level_name": "ERROR",
                "name": "audit_upload_status",
                "path": "/matrix-files/PKBFI2503EGQY/"
            }
        ],
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released matrix file [PKBFI2503EGQY](/matrix-files/PKBFI2503EGQY/) has in progress subobject reference file [PKBFI5924NPMC](/reference-files/PKBFI5924NPMC/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/matrix-files/PKBFI2503EGQY/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK1385121/",
        "component": "data coordination"
    },
    "content_summary": "cell by genomic position sparse peak count matrix",
    "content_type": "sparse peak count matrix",
    "creation_timestamp": "2024-12-23T09:49:18.869880+00:00",
    "dimension1": "cell",
    "dimension2": "genomic position",
    "file_format": "mtx",
    "file_set": "/analysis-sets/PKBDS3334GGSG/",
    "file_url": "https://pankbase-data-v1.s3.us-west-2.amazonaws.com/processed_data/single_nucleus_ATAC/pancreatic_islets/SAMN22562810/HPAP-099_sparse_matrix.mtx.gz",
    "gene_list_for": [],
    "href": "/matrix-files/PKBFI2503EGQY/@@download/PKBFI2503EGQY.mtx",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/pankbase-consortium/",
        "title": "Pankbase Consortium, PanKbase"
    },
    "loci_list_for": [],
    "md5sum": "a666aee9ec1f5cd09393f6e2b38f4aba",
    "reference_files": [
        "/reference-files/PKBFI5924NPMC/"
    ],
    "release_timestamp": "2025-01-10T01:34:34.487993+00:00",
    "s3_uri": "s3://pankbase-files/2024/12/23/fc6a456b-f294-41ca-b8c7-2b58d6ccec9d/PKBFI2503EGQY.mtx",
    "schema_version": "6",
    "status": "released",
    "submitted_by": {
        "@id": "/users/7e95dcd6-9c35-4082-9c53-09d14c5752be/",
        "title": "Parul Kudtarkar"
    },
    "summary": "cell by genomic position sparse peak count matrix",
    "upload_status": "invalidated",
    "uuid": "fc6a456b-f294-41ca-b8c7-2b58d6ccec9d"
}