PKBFI1553PGUM

{
    "@context": "/terms/",
    "@id": "/matrix-files/PKBFI1553PGUM/",
    "@type": [
        "MatrixFile",
        "File",
        "Item"
    ],
    "accession": "PKBFI1553PGUM",
    "aliases": [
        "pankbase-consortium:140scRNAseqDonors_HPAP-IIDP-Prodo_v3.3_RUVnormalizedPseudoBulkCounts_DE_delta_ruvNormCounts"
    ],
    "analysis_step_version": "/analysis-step-versions/83143b51-12da-4721-a652-db80ef6dbdcc/",
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released matrix file [PKBFI1553PGUM](/matrix-files/PKBFI1553PGUM/) has in progress subobject analysis step version [83143b51-12da-4721-a652-db80ef6dbdcc](/analysis-step-versions/83143b51-12da-4721-a652-db80ef6dbdcc/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/matrix-files/PKBFI1553PGUM/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK138512/",
        "component": "data coordination"
    },
    "content_summary": "sample by gene sparse gene count matrix",
    "content_type": "sparse gene count matrix",
    "creation_timestamp": "2025-06-17T18:29:51.571008+00:00",
    "description": "The count matrices of delta with metadata. The counts here are `log2(RUV-normalized counts + 1)`",
    "dimension1": "sample",
    "dimension2": "gene",
    "file_format": "mtx",
    "file_set": "/analysis-sets/PKBDS5505XMWS/",
    "file_url": "https://pankbase-data-v1.s3.us-west-2.amazonaws.com/analysis_resources/single_cell_expression/20250522_data_for_platform/Delta_ruvNormCounts.txt",
    "gene_list_for": [],
    "href": "/matrix-files/PKBFI1553PGUM/@@download/PKBFI1553PGUM.mtx",
    "input_file_for": [
        "/tabular-files/PKBFI3428ENDH/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/pankbase-consortium/",
        "title": "Pankbase Consortium, PanKbase"
    },
    "loci_list_for": [],
    "md5sum": "d034cc9422c46d216cd5cdaae41205cb",
    "reference_files": [
        "/reference-files/PKBFI5924NPMC/"
    ],
    "release_timestamp": "2025-06-18T18:32:07.249084+00:00",
    "schema_version": "6",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "summary": "sample by gene sparse gene count matrix",
    "upload_status": "validated",
    "uuid": "3d322fce-8d02-417d-b33e-1545453b8945"
}