PKBDO9514XQOS
{
"@context": "/terms/",
"@id": "/human-donors/PKBDO9514XQOS/",
"@type": [
"HumanDonor",
"Donor",
"Item"
],
"aab_gada": false,
"aab_gada_value": 0,
"aab_ia2": false,
"aab_ia2_value": 0,
"aab_iaa": false,
"aab_iaa_value": -0.001,
"aab_znt8": false,
"aab_znt8_value": -0.003,
"accession": "PKBDO9514XQOS",
"age": 27,
"aliases": [
"klaus-kaestner:HPAP-146"
],
"audit": {
"WARNING": [
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBDO9514XQOS](/human-donors/PKBDO9514XQOS/) is missing tier 2 field `glucose_loweing_theraphy`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier2_fields",
"path": "/human-donors/PKBDO9514XQOS/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO9514XQOS](/human-donors/PKBDO9514XQOS/) is missing tier 3 field `phenotypic_features`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO9514XQOS/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO9514XQOS](/human-donors/PKBDO9514XQOS/) is missing tier 3 field `biological_sex`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO9514XQOS/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO9514XQOS](/human-donors/PKBDO9514XQOS/) is missing tier 3 field `aab_gada_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO9514XQOS/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO9514XQOS](/human-donors/PKBDO9514XQOS/) is missing tier 3 field `aab_ia2_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO9514XQOS/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO9514XQOS](/human-donors/PKBDO9514XQOS/) is missing tier 3 field `aab_iaa_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO9514XQOS/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO9514XQOS](/human-donors/PKBDO9514XQOS/) is missing tier 3 field `aab_znt8_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO9514XQOS/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO9514XQOS](/human-donors/PKBDO9514XQOS/) is missing tier 3 field `other_theraphy`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO9514XQOS/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO9514XQOS](/human-donors/PKBDO9514XQOS/) is missing tier 3 field `documents`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO9514XQOS/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO9514XQOS](/human-donors/PKBDO9514XQOS/) is missing tier 3 field `t1d_stage`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO9514XQOS/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO9514XQOS](/human-donors/PKBDO9514XQOS/) is missing tier 3 field `related_donors`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO9514XQOS/"
}
]
},
"award": {
"@id": "/awards/UC4DK112217/"
},
"bmi": 28.31,
"c_peptide": 9.56,
"cause_of_death": "Head Trauma",
"center_donor_id": "SAMN35774092",
"collections": [
"HPAP"
],
"creation_timestamp": "2024-12-03T20:17:04.794243+00:00",
"data_available": [
{
"dataset": "Genotyping",
"dataset_link": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs002465.v1.p1",
"dataset_tissue": "-"
},
{
"dataset": "HLA_typing",
"dataset_link": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs002465.v1.p1",
"dataset_tissue": "-"
},
{
"dataset": "Function",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Islet"
},
{
"dataset": "CyTof",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Islet"
},
{
"dataset": "histology",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Pancreas"
},
{
"dataset": "CODEX",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Pancreas"
},
{
"dataset": "imaging_mass_spec",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Pancreas"
},
{
"dataset": "TCRseq",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Spleen"
},
{
"dataset": "BCRseq",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Spleen"
},
{
"dataset": "Flow_cytometry",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Spleen"
},
{
"dataset": "histology",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Spleen"
},
{
"dataset": "Flow_cytometry",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Lymph"
},
{
"dataset": "histology",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Lymph"
},
{
"dataset": "Flow_cytometry",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Peripheral_blood"
}
],
"dbxrefs": [
"PANC-DB:HPAP-146"
],
"derived_diabetes_status": "Normal",
"description": "Human donor SAMN35774092 in the HPAP database",
"diabetes_duration": "-",
"diabetes_status": [],
"diabetes_status_description": "control without diabetes",
"donation_type": "Donation after Brain Death",
"ethnicities": [
"African American"
],
"family_history_of_diabetes": "true",
"family_history_of_diabetes_relationship": [
"Maternal_grandmother",
"uncle",
"aunt"
],
"genetic_ethnicities": [
{
"ethnicity": "African",
"percentage": 59
},
{
"ethnicity": "European",
"percentage": 26
},
{
"ethnicity": "Admixed-American",
"percentage": 11
},
{
"ethnicity": "East-Asian",
"percentage": 3
},
{
"ethnicity": "South-Asian",
"percentage": 1
}
],
"hba1c": 5.5,
"hla_typing": [
"A,11:01-36:01,NGS",
"B,51:01-53:01,NGS",
"C,04:01-15:02,NGS",
"DPA1,01:03-.,NGS",
"DPB1,02:01-03:01,NGS",
"DQA1,01:02-05:05,NGS",
"DQB1,03:01-06:02,NGS",
"DRB1,11:01-.,NGS",
"DRB3,02:02-.,NGS",
"A,11-36,RT-PCR",
"B,51-53,RT-PCR",
"Bw4,1-1,RT-PCR",
"Bw6,0-0,RT-PCR",
"C,04-15,RT-PCR",
"DPA1,01-01,RT-PCR",
"DPB1,02:01-03:01,RT-PCR",
"DQA1,01-05,RT-PCR",
"DQB1,7-6,RT-PCR",
"DR,11-11,RT-PCR",
"DR51,0-0,RT-PCR",
"DR52,52-0,RT-PCR",
"DR53,0-0,RT-PCR"
],
"hospital_stay": 66,
"human_donor_identifiers": [
"PANC-DB:HPAP-146"
],
"lab": {
"@id": "/labs/klaus-kaestner/",
"title": "Klaus Kaestner, UPenn"
},
"living_donor": false,
"notes": "Cohort_ID:HPAP-146;-",
"other_tissues_available": [
"/sample-terms/UBERON_0002113/",
"/sample-terms/UBERON_0002107/",
"/sample-terms/UBERON_0002048/",
"/sample-terms/UBERON_0001264/",
"/sample-terms/UBERON_0000948/"
],
"pancreas_tissue_available": true,
"publication_identifiers": [
"PMID:31127054",
"PMID:36206763"
],
"release_timestamp": "2025-01-10T01:41:23.519399+00:00",
"rrid": "RRID:SAMN35774092",
"schema_version": "18",
"sex": "male",
"status": "released",
"submitted_by": {
"@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
"title": "Ying Sun"
},
"submitter_comment": "Meta-data was obtained directly from PANC-DB",
"summary": "African American male",
"taxa": "Homo sapiens",
"url": "https://hpap.pmacs.upenn.edu/explore/donor/donor-summary/HPAP-146",
"uuid": "da55bfb4-f702-43a3-8d3e-aef7225325ec",
"virtual": false
}
Supported by National Institutes of Health (NIH) grants U24 DK138515, U24 DK138512
Supplemental funds from the NIH Office of Data Science Strategies
Supplemental funds from the NIH Office of Data Science Strategies
