PKBDO8801MICJ

{
    "@context": "/terms/",
    "@id": "/human-donors/PKBDO8801MICJ/",
    "@type": [
        "HumanDonor",
        "Donor",
        "Item"
    ],
    "aab_gada": true,
    "aab_gada_value": 938,
    "aab_ia2": false,
    "aab_ia2_value": 1,
    "aab_iaa": true,
    "aab_iaa_value": 1.261,
    "aab_znt8": false,
    "aab_znt8_value": -0.003,
    "accession": "PKBDO8801MICJ",
    "age": 14,
    "aliases": [
        "klaus-kaestner:HPAP-168"
    ],
    "audit": {
        "WARNING": [
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBDO8801MICJ](/human-donors/PKBDO8801MICJ/) is missing tier 2 field `glucose_loweing_theraphy`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier2_fields",
                "path": "/human-donors/PKBDO8801MICJ/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO8801MICJ](/human-donors/PKBDO8801MICJ/) is missing tier 3 field `phenotypic_features`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier3_fields",
                "path": "/human-donors/PKBDO8801MICJ/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO8801MICJ](/human-donors/PKBDO8801MICJ/) is missing tier 3 field `genetic_ethnicities`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier3_fields",
                "path": "/human-donors/PKBDO8801MICJ/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO8801MICJ](/human-donors/PKBDO8801MICJ/) is missing tier 3 field `biological_sex`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier3_fields",
                "path": "/human-donors/PKBDO8801MICJ/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO8801MICJ](/human-donors/PKBDO8801MICJ/) is missing tier 3 field `aab_gada_assay`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier3_fields",
                "path": "/human-donors/PKBDO8801MICJ/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO8801MICJ](/human-donors/PKBDO8801MICJ/) is missing tier 3 field `aab_ia2_assay`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier3_fields",
                "path": "/human-donors/PKBDO8801MICJ/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO8801MICJ](/human-donors/PKBDO8801MICJ/) is missing tier 3 field `aab_iaa_assay`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier3_fields",
                "path": "/human-donors/PKBDO8801MICJ/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO8801MICJ](/human-donors/PKBDO8801MICJ/) is missing tier 3 field `aab_znt8_assay`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier3_fields",
                "path": "/human-donors/PKBDO8801MICJ/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO8801MICJ](/human-donors/PKBDO8801MICJ/) is missing tier 3 field `other_theraphy`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier3_fields",
                "path": "/human-donors/PKBDO8801MICJ/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO8801MICJ](/human-donors/PKBDO8801MICJ/) is missing tier 3 field `documents`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier3_fields",
                "path": "/human-donors/PKBDO8801MICJ/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO8801MICJ](/human-donors/PKBDO8801MICJ/) is missing tier 3 field `related_donors`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier3_fields",
                "path": "/human-donors/PKBDO8801MICJ/"
            }
        ]
    },
    "award": {
        "@id": "/awards/UC4DK112217/"
    },
    "bmi": 17.03,
    "c_peptide": 0.21,
    "cause_of_death": "Anoxia",
    "center_donor_id": "SAMN41604306",
    "collections": [
        "HPAP"
    ],
    "creation_timestamp": "2024-12-03T20:17:43.095023+00:00",
    "data_available": [
        {
            "dataset": "HLA_typing",
            "dataset_link": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs002465.v1.p1",
            "dataset_tissue": "-"
        },
        {
            "dataset": "CyTof",
            "dataset_link": "https://hpap.pmacs.upenn.edu",
            "dataset_tissue": "Islet"
        },
        {
            "dataset": "TCRseq",
            "dataset_link": "https://hpap.pmacs.upenn.edu",
            "dataset_tissue": "Spleen"
        },
        {
            "dataset": "BCRseq",
            "dataset_link": "https://hpap.pmacs.upenn.edu",
            "dataset_tissue": "Spleen"
        }
    ],
    "dbxrefs": [
        "PANC-DB:HPAP-168"
    ],
    "derived_diabetes_status": "Diabetes",
    "description": "Human donor SAMN41604306 in the HPAP database",
    "diabetes_duration": "5",
    "diabetes_status": [
        "/phenotype-terms/MONDO_0005147/"
    ],
    "diabetes_status_description": "type 1 diabetes",
    "donation_type": "Donation after Brain Death",
    "ethnicities": [
        "White"
    ],
    "family_history_of_diabetes": "true",
    "family_history_of_diabetes_relationship": [
        "Father",
        "Maternal_grandfather"
    ],
    "hba1c": 14.6,
    "hla_typing": [
        "A,01:01-32:01,NGS",
        "B,08:01-39:01,NGS",
        "C,02:02-07:01,NGS",
        "DPA1,01:03-02:01,NGS",
        "DPB1,01:01-04:01,NGS",
        "DQA1,01:01-05:01,NGS",
        "DQB1,02:01-05:01,NGS",
        "DRB1,01:01-03:01,NGS",
        "DRB3,01:01-.,NGS",
        "A,1-32,RT-PCR",
        "B,8-39,RT-PCR",
        "Bw4,0-0,RT-PCR",
        "Bw6,1-1,RT-PCR",
        "C,02-07,RT-PCR",
        "DPA1,01-02,RT-PCR",
        "DPB1,01:01-04:01,RT-PCR",
        "DQA1,01-05,RT-PCR",
        "DQB1,2-5,RT-PCR",
        "DR,1-17,RT-PCR",
        "DR51,0-0,RT-PCR",
        "DR52,52-0,RT-PCR",
        "DR53,0-0,RT-PCR"
    ],
    "hospital_stay": 182,
    "human_donor_identifiers": [
        "PANC-DB:HPAP-168"
    ],
    "lab": {
        "@id": "/labs/klaus-kaestner/",
        "title": "Klaus Kaestner, UPenn"
    },
    "living_donor": false,
    "notes": "Cohort_ID:HPAP-168;hypothyroidism, cellulitis",
    "other_tissues_available": [
        "/sample-terms/UBERON_0002113/",
        "/sample-terms/UBERON_0002107/",
        "/sample-terms/UBERON_0002048/",
        "/sample-terms/UBERON_0001264/",
        "/sample-terms/UBERON_0000948/"
    ],
    "pancreas_tissue_available": true,
    "publication_identifiers": [
        "PMID:31127054",
        "PMID:36206763"
    ],
    "release_timestamp": "2025-01-10T01:41:28.575292+00:00",
    "rrid": "RRID:SAMN41604306",
    "schema_version": "18",
    "sex": "female",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "submitter_comment": "Meta-data was obtained directly from PANC-DB",
    "summary": "White female /phenotype-terms/MONDO_0005147/",
    "t1d_stage": "Stage 3: One or more autoantibodies and diagnostic hyperglycemia or T1D diagnosis",
    "taxa": "Homo sapiens",
    "url": "https://hpap.pmacs.upenn.edu/explore/donor/donor-summary/HPAP-168",
    "uuid": "f7d6b923-4999-42bd-ace7-1bb58800d0dc",
    "virtual": false
}