PKBDO6238OJDA
{
"@context": "/terms/",
"@id": "/human-donors/PKBDO6238OJDA/",
"@type": [
"HumanDonor",
"Donor",
"Item"
],
"aab_gada": false,
"aab_ia2": false,
"aab_iaa": true,
"aab_znt8": false,
"accession": "PKBDO6238OJDA",
"age": 49,
"aliases": [
"atkinson:6329"
],
"audit": {
"WARNING": [
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 2 field `glucose_loweing_theraphy`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier2_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 2 field `donation_type`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier2_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `dbxrefs`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `phenotypic_features`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `genetic_ethnicities`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `biological_sex`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `aab_gada_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `aab_gada_value`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `aab_ia2_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `aab_ia2_value`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `aab_iaa_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `aab_iaa_value`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `aab_znt8_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `aab_znt8_value`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `other_theraphy`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `documents`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `t1d_stage`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `data_available`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO6238OJDA](/human-donors/PKBDO6238OJDA/) is missing tier 3 field `related_donors`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO6238OJDA/"
}
]
},
"award": {
"@id": "/awards/3-SRA-2023-1417-S-B/"
},
"bmi": 36.36,
"c_peptide": 7.46,
"cause_of_death": "Anoxia",
"center_donor_id": "SAMN15879383",
"collections": [
"nPOD"
],
"creation_timestamp": "2024-12-04T00:26:52.055395+00:00",
"derived_diabetes_status": "Diabetes",
"description": "Human donor SAMN15879383 in the nPOD database",
"diabetes_duration": "25",
"diabetes_status": [
"/phenotype-terms/MONDO_0005148/"
],
"diabetes_status_description": "type 2 diabetes",
"ethnicities": [
"Hispanic"
],
"family_history_of_diabetes": "true",
"family_history_of_diabetes_relationship": [
"mother",
"siblings"
],
"hba1c": 11.2,
"hla_typing": [
"A,24:02-68:03,NGS",
"B,.-.,NGS",
"C,.-.,NGS",
"DRB1,04:11-08:02,NGS",
"DQA1,03:01-04:01,NGS",
"DQB1,03:02-04:02,NGS",
"DPA1,.-.,NGS",
"DPB1,.-.,NGS"
],
"hospital_stay": 126,
"human_donor_identifiers": [
"nPOD_portal:6329"
],
"lab": {
"@id": "/labs/mark-atkinson/",
"title": "Mark Atkinson, UFHealth"
},
"living_donor": false,
"notes": "Cohort_ID:6329;hypertension, high cholesterol, end stage renal disease, coronary artery disease, vertigo",
"other_tissues_available": [],
"pancreas_tissue_available": true,
"publication_identifiers": [
"PMID:24325575",
"PMID:22585677"
],
"release_timestamp": "2025-01-10T01:37:48.744471+00:00",
"rrid": "RRID:SAMN15879383",
"schema_version": "18",
"sex": "female",
"status": "released",
"submitted_by": {
"@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
"title": "Ying Sun"
},
"submitter_comment": "Meta-data was obtained directly from the nPOD portal",
"summary": "Hispanic female /phenotype-terms/MONDO_0005148/",
"taxa": "Homo sapiens",
"url": "https://portal.jdrfnpod.org/",
"uuid": "fb90fa7d-929d-466f-9cf5-b7e700982b54",
"virtual": false
}
Supported by National Institutes of Health (NIH) grants U24 DK138515, U24 DK138512
Supplemental funds from the NIH Office of Data Science Strategies
Supplemental funds from the NIH Office of Data Science Strategies
