PKBDO6015OXWK

released

PKBDO6015OXWK

released
RRID RRID:SAMN19776451Program Donor ID SAMN19776451

Clinical summary

Diabetes status
Type 1 Diabetes
Age (y)
14
Age group
13-17
BMI
13.2
Height (cm)
—
Weight (kg)
—
HbA1c %
—
C-Peptide (ng/ml)
0.37
Diabetes duration
0
AAB summary
GADA+, IAA+, IA2+, ZNT8+
AAB count
4

Demographics

Age (y)
14
Age group
13-17
Pediatric
Yes
Gender
Male
Genetic Sex
Male
Sex discordant
No
Ethnicity
White
Predicted genetic ancestry
European (100%)
Dominant genetic ancestry
European

Additional clinical

Diabetes (ontology)
T1D stage
Stage 3: one or more autoantibodies and diagnostic hyperglycemia or T1D diagnosis
Tier 1 complete
Yes
Family history of diabetes
-
Living donor
No
Cause of death
Anoxia
Donation type
Donation after brain death
Hospital stay (h)
163
Medication
Insulin

Autoantibodies

Summary
GADA+, IAA+, IA2+, ZNT8+
Any positive
Yes
Tested
Yes
Positive count
4
GADAPositive
29 unit/ml
IAAPositive
0.013 unit/ml
IA2Positive
207 unit/ml
ZNT8Positive
0.073 unit/ml

HLA typing

LocusAllele 1Allele 2Method
A01:0102:01NGS
A12RT-PCR
B4553RT-PCR
B45:0153:01NGS
C06:0204:01NGS
C46RT-PCR
DPA101:03—NGS
DPA101:03—RT-PCR
DPB103:0104:01RT-PCR
DPB104:01104:01NGS
DQA101:0205:01NGS
DQA101:0205:01RT-PCR
DQB102:0106:04NGS
DQB102:0106:04RT-PCR
DRB103:0113:02NGS
DRB103:0113:02RT-PCR
DRB302:0203:01NGS
DRB302:0203:01RT-PCR
DRB4——NGS
DRB4——RT-PCR
DRB5——NGS
DRB5——RT-PCR

Data available

Datasets
Genotyping, HLA_typing, scRNAseq, Function, Imaging, CyTof, Histology, imaging_mass_spec, scMultiome, snATACseq, TCRseq, BCRseq, CITEseq, Flow_cytometry
Tissues
unspecified, Islet, Pancreas, Spleen, Lymph, Thymus, Peripheral_blood

Genetics

GenotypingAccess dataset
HLA_typingAccess dataset

Pancreas

imaging_mass_specAccess dataset

Spleen

Lymph

scMultiomeAccess dataset
Flow_cytometryAccess dataset

Thymus

Peripheral_blood

Flow_cytometryAccess dataset

Supplementary

HPAP
Identifiers
PANC-DB:HPAP-020
Pancreas tissue available
Yes
Publication identifiers
PMID:31127054, PMID:36206763
Description
Human pancreas donor SAMN19776451 in the HPAP database
External resources
PANC-DB:HPAP-020

Attribution

HPAP collection
Data Library