PKBDO4608NBMG

released

PKBDO4608NBMG

released
RRID RRID:SAMN19776474Program Donor ID SAMN19776474

Clinical summary

Diabetes status
Control Without Diabetes
Age (y)
15
Age group
13-17
BMI
24.07
Height (cm)
—
Weight (kg)
—
HbA1c %
5.9
C-Peptide (ng/ml)
3.19
Diabetes duration
—
AAB summary
IA2+, ZNT8+
AAB count
2

Demographics

Age (y)
15
Age group
13-17
Pediatric
Yes
Gender
Male
Genetic Sex
Male
Sex discordant
No
Ethnicity
Hispanic
Predicted genetic ancestry
Admixed-American (99%), African (1%)
Dominant genetic ancestry
Admixed-American

Additional clinical

Diabetes (ontology)
No ontology term
T1D stage
Stage 2: two or more autoantibodies, dysglycemia (e.g., HbA1c ≥ 5.7%)
HbA1c-derived diabetes status
Prediabetes
Label vs HbA1c discordant
No
Tier 1 complete
No
Family history of diabetes
TRUE
Family history relationship
Grandmother
Living donor
No
Cause of death
Head Trauma
Donation type
Donation after circulatory death
Hospital stay (h)
195

Autoantibodies

Summary
IA2+, ZNT8+
Any positive
Yes
Tested
Yes
Positive count
2
GADANegative
0 unit/ml
IAANegative
0.001 unit/ml
IA2Positive
155 unit/ml
ZNT8Positive
0.09 unit/ml

HLA typing

LocusAllele 1Allele 2Method
A2432RT-PCR
A24:0232:103NGS
B3539RT-PCR
B35:0239:06NGS
Bw400RT-PCR
Bw611RT-PCR
C0407RT-PCR
C04:0107:02NGS
DPA101:03—NGS
DPB102:0104:02NGS
DPB102:0104:02RT-PCR
DQA10505RT-PCR
DQA105:0305:05NGS
DQB103:01—NGS
DQB177RT-PCR
DR1114RT-PCR
DR510—RT-PCR
DR525252RT-PCR
DR530—RT-PCR
DRB111:0414:06NGS
DRB301:0102:02NGS
DRB4——NGS
DRB5——NGS

Data available

Datasets
Genotyping, HLA_typing, scRNAseq, snATACseq, Function, Imaging, CyTof, Histology, imaging_mass_spec, TCRseq, BCRseq, Flow_cytometry
Tissues
unspecified, Islet, Pancreas, Spleen, Lymph, Peripheral_blood

Genetics

GenotypingAccess dataset
HLA_typingAccess dataset

Pancreas

imaging_mass_specAccess dataset

Spleen

Lymph

Flow_cytometryAccess dataset

Peripheral_blood

Flow_cytometryAccess dataset

Supplementary

HPAP
Identifiers
PANC-DB:HPAP-043
Pancreas tissue available
Yes
Publication data
Publication identifiers
PMID:31127054, PMID:36206763
Description
Human pancreas donor SAMN19776474 in the HPAP database
External resources
PANC-DB:HPAP-043

Attribution

HPAP collection
Data Library