released

PKBDO4279KIKJ

released

RRID RRID:SAMN19776473Program Donor ID SAMN19776473

Clinical summary

Diabetes status

Control Without Diabetes

Age (y)

1

Age group

0-12

BMI

17.9

Height (cm)

—

Weight (kg)

—

HbA1c %

5.6

C-Peptide (ng/ml)

2.72

Diabetes duration

—

AAB summary

none positive

AAB count

0

Demographics

Age (y): 1
Age group: 0-12
Pediatric: Yes
Gender: Male
Genetic Sex: Male
Sex discordant: No
Ethnicity: White
Predicted genetic ancestry: European (100%)
Dominant genetic ancestry: European

Additional clinical

Diabetes (ontology): No ontology term
T1D stage: No sufficient information to derive
HbA1c-derived diabetes status: Normal
Label vs HbA1c discordant: No
Tier 1 complete: No
Family history of diabetes: -
Living donor: No
Cause of death: Anoxia/Cardiovascular
Donation type: Donation after circulatory death
Hospital stay (h): 43

Autoantibodies

Summary: none positive
Any positive: No
Tested: Yes
Positive count: 0

GADANegative

0 unit/ml

IAANegative

0.003 unit/ml

IA2Negative

0 unit/ml

ZNT8Negative

0.009 unit/ml

HLA typing

Locus	Allele 1	Allele 2	Method
A	02:01	68:01	NGS
A	2	68	RT-PCR
B	15:01	44:02	NGS
B	62	44	RT-PCR
Bw4	1	1	RT-PCR
Bw6	1	1	RT-PCR
C	04:01	05:01	NGS
C	4	5	RT-PCR
DPA1	01:03	—	NGS
DPB1	03:01	04:01	NGS
DPB1	03:01	04:01	RT-PCR
DQA1	03	—	RT-PCR
DQA1	03:01	03:03	NGS
DQB1	03:01	03:02	NGS
DQB1	7	8	RT-PCR
DR	4	—	RT-PCR
DR51	0	0	RT-PCR
DR52	0	0	RT-PCR
DR53	4:01	0	RT-PCR
DRB1	04:01	04:03	NGS
DRB3	—	—	NGS
DRB4	01:03	—	NGS
DRB5	—	—	NGS

Data available

Datasets: Genotyping, HLA_typing, scRNAseq, snATACseq, Function, Histology, CODEX, imaging_mass_spec, TCRseq, BCRseq, Flow_cytometry
Tissues: unspecified, Islet, Pancreas, Spleen, Lymph, Peripheral_blood

Genetics

GenotypingAccess dataset

HLA_typingAccess dataset

Islet

scRNAseqAccess dataset

snATACseqAccess dataset

FunctionAccess dataset

Pancreas

histologyAccess dataset

CODEXAccess dataset

imaging_mass_specAccess dataset

Spleen

TCRseqAccess dataset

BCRseqAccess dataset

Flow_cytometryAccess dataset

histologyAccess dataset

Lymph

Flow_cytometryAccess dataset

histologyAccess dataset

Peripheral_blood

Flow_cytometryAccess dataset

Supplementary

HPAP

Identifiers

PANC-DB:HPAP-042

Pancreas tissue available: Yes
Other tissues: UBERON:0002113, UBERON:0001264

Publication data

PMID:35228745, PMID:37582230

Publication identifiers

PMID:31127054, PMID:36206763

Description

Human pancreas donor SAMN19776473 in the HPAP database

External resources

PANC-DB:HPAP-042

URL

https://hpap.pmacs.upenn.edu/explore/donor/donor-summary/HPAP-042

Attribution