released

PKBDO4129ELKU

released

RRID RRID:SAMN19842595Program Donor ID SAMN19842595

Clinical summary

Diabetes status

Control Without Diabetes

Age (y)

58

Age group

40-64

BMI

31.07

Height (cm)

—

Weight (kg)

—

HbA1c %

6.2

C-Peptide (ng/ml)

3.88

Diabetes duration

—

AAB summary

none positive

AAB count

0

Demographics

Age (y): 58
Age group: 40-64
Pediatric: No
Gender: Female
Genetic Sex: Female
Sex discordant: No
Ethnicity: African American
Predicted genetic ancestry: African (99%), Admixed-American (1%)
Dominant genetic ancestry: African

Additional clinical

Diabetes (ontology): No ontology term
T1D stage: No sufficient information to derive
HbA1c-derived diabetes status: Prediabetes
Label vs HbA1c discordant: No
Tier 1 complete: No
Family history of diabetes: FALSE
Living donor: No
Cause of death: Cerebrovascular/Stroke
Donation type: Donation after brain death
Hospital stay (h): 51

Autoantibodies

Summary: none positive
Any positive: No
Tested: Yes
Positive count: 0

GADANegative

0 unit/ml

IAANegative

0.001 unit/ml

IA2Negative

0 unit/ml

ZNT8Negative

-0.003 unit/ml

HLA typing

Status: X/DR3

Locus	Allele 1	Allele 2	Method
A	30	36	RT-PCR
B	35	58	RT-PCR
Bw4	1	1	RT-PCR
Bw6	1	1	RT-PCR
C	04	07	RT-PCR
DPB1	11:01	17:01	RT-PCR
DQA1	01	05	RT-PCR
DQB1	2	6	RT-PCR
DR	17	15	RT-PCR
DR51	51	0	RT-PCR
DR52	52	0	RT-PCR
DR53	0	0	RT-PCR

Data available

Datasets: Genotyping, HLA_typing, RNAseq, scRNAseq, ATAC-seq, snATACseq, Function, Imaging, CyTof, WGBS, Histology, CODEX, imaging_mass_spec
Tissues: unspecified, Islet, Pancreas, Spleen, Lymph

Genetics

GenotypingAccess dataset

HLA_typingAccess dataset

Islet

RNAseqAccess dataset

scRNAseqAccess dataset

ATAC-seqAccess dataset

snATACseqAccess dataset

FunctionAccess dataset

ImagingAccess dataset

CyTofAccess dataset

WGBSAccess dataset

Pancreas

histologyAccess dataset

CODEXAccess dataset

imaging_mass_specAccess dataset

Spleen

histologyAccess dataset

Lymph

histologyAccess dataset

Supplementary

HPAP

Identifiers

PANC-DB:HPAP-066

Pancreas tissue available: Yes
Other tissues: UBERON:0002048, UBERON:0002107, UBERON:0002113, UBERON:0001264

Publication identifiers

PMID:31127054, PMID:36206763

Description

Human pancreas donor SAMN19842595 in the HPAP database

External resources

PANC-DB:HPAP-066

URL

https://hpap.pmacs.upenn.edu/explore/donor/donor-summary/HPAP-066

Attribution