{
"@context": "/terms/",
"@id": "/human-donors/PKBDO3784XVAO/",
"@type": [
"HumanDonor",
"Donor",
"Item"
],
"aab_gada": false,
"aab_gada_value": 0,
"aab_ia2": false,
"aab_ia2_value": 0,
"aab_iaa": false,
"aab_iaa_value": -0.008,
"aab_znt8": false,
"aab_znt8_value": 0,
"accession": "PKBDO3784XVAO",
"age": 28,
"aliases": [
"klaus-kaestner:HPAP-099"
],
"audit": {
"WARNING": [
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBDO3784XVAO](/human-donors/PKBDO3784XVAO/) is missing tier 2 field `diabetes_status_hba1c`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_desired_fields",
"path": "/human-donors/PKBDO3784XVAO/"
},
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBDO3784XVAO](/human-donors/PKBDO3784XVAO/) is missing tier 2 field `glucose_loweing_theraphy`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_desired_fields",
"path": "/human-donors/PKBDO3784XVAO/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO3784XVAO](/human-donors/PKBDO3784XVAO/) is missing tier 3 field `phenotypic_features`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_optional_fields",
"path": "/human-donors/PKBDO3784XVAO/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO3784XVAO](/human-donors/PKBDO3784XVAO/) is missing tier 3 field `family_history_of_diabetes_relationship`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_optional_fields",
"path": "/human-donors/PKBDO3784XVAO/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO3784XVAO](/human-donors/PKBDO3784XVAO/) is missing tier 3 field `biological_sex`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_optional_fields",
"path": "/human-donors/PKBDO3784XVAO/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO3784XVAO](/human-donors/PKBDO3784XVAO/) is missing tier 3 field `diabetes_duration`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_optional_fields",
"path": "/human-donors/PKBDO3784XVAO/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO3784XVAO](/human-donors/PKBDO3784XVAO/) is missing tier 3 field `documents`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_optional_fields",
"path": "/human-donors/PKBDO3784XVAO/"
}
]
},
"award": {
"@id": "/awards/UC4DK112217/"
},
"bmi": 24.7,
"c_peptide": 6.62,
"cause_of_death": "Cerebrovascular/Stroke",
"center_donor_id": "SAMN22562810",
"collections": [
"HPAP"
],
"creation_timestamp": "2024-10-14T22:34:56.651686+00:00",
"data_available": [
{
"dataset": "Genotyping",
"dataset_link": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs002465.v1.p1",
"dataset_tissue": "-"
},
{
"dataset": "HLA_typing",
"dataset_link": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs002465.v1.p1",
"dataset_tissue": "-"
},
{
"dataset": "RNAseq",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Islet"
},
{
"dataset": "scRNAseq",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Islet"
},
{
"dataset": "snATACseq",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Islet"
},
{
"dataset": "Function",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Islet"
},
{
"dataset": "Imaging",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Islet"
},
{
"dataset": "CyTof",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Islet"
},
{
"dataset": "histology",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Pancreas"
},
{
"dataset": "imaging_mass_spec",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Pancreas"
},
{
"dataset": "TCRseq",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Spleen"
},
{
"dataset": "BCRseq",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Spleen"
},
{
"dataset": "CITEseq",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Spleen"
},
{
"dataset": "Flow_cytometry",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Spleen"
},
{
"dataset": "histology",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Spleen"
},
{
"dataset": "CITEseq",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Lymph"
},
{
"dataset": "Flow_cytometry",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Lymph"
},
{
"dataset": "histology",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Lymph"
},
{
"dataset": "Flow_cytometry",
"dataset_link": "https://hpap.pmacs.upenn.edu",
"dataset_tissue": "Peripheral_blood"
}
],
"dbxrefs": [
"PANC-DB:HPAP-099"
],
"description": "Human pancreas donor SAMN22562810 in the HPAP database",
"diabetes_status": [],
"diabetes_status_description": "non-diabetic",
"donation_type": "DBD",
"ethnicities": [
"Hispanic"
],
"family_history_of_diabetes": "NA",
"genetic_ethnicities": [
{
"ethnicity": "Admixed-American",
"percentage": 73
},
{
"ethnicity": "African",
"percentage": 23
},
{
"ethnicity": "European",
"percentage": 3
},
{
"ethnicity": "South-Asian",
"percentage": 1
},
{
"ethnicity": "East-Asian",
"percentage": 1
}
],
"hba1c": 5,
"hla_typing": [
"A,03:01-30:02,NGS",
"A,3-30,RT-PCR",
"B,45-49,RT-PCR",
"B,45:01-49:01,NGS",
"Bw4,1-1,RT-PCR",
"Bw6,1-1,RT-PCR",
"C,07-16,RT-PCR",
"C,07:02-16:01,NGS",
"DPA1,01:03-.,NGS",
"DPB1,04:01-18:01,NGS",
"DPB1,04:01-18:01,RT-PCR",
"DQA1,01-05,RT-PCR",
"DQA1,01:01-05:05,NGS",
"DQB1,03:19-05:01,NGS",
"DQB1,7-5,RT-PCR",
"DR,1-11,RT-PCR",
"DR51,0-0,RT-PCR",
"DR52,52-52,RT-PCR",
"DR53,0-0,RT-PCR",
"DRB1,01:02-11:02,NGS",
"DRB3,02:02-.,NGS",
"DRB4,.-.,NGS",
"DRB5,.-.,NGS"
],
"hospital_stay": 164,
"human_donor_identifiers": [
"PANC-DB:HPAP-099"
],
"lab": {
"@id": "/labs/klaus-kaestner/",
"title": "Klaus Kaestner, UPenn"
},
"living_donor": false,
"notes": "other disease states: Hypertension",
"other_tissues_available": [
"/sample-terms/UBERON_0002113/",
"/sample-terms/UBERON_0002107/",
"/sample-terms/UBERON_0002048/",
"/sample-terms/UBERON_0001264/",
"/sample-terms/UBERON_0000948/"
],
"pancreas_tissue_available": true,
"publication_identifiers": [
"PMID:31127054",
"PMID:36206763"
],
"release_timestamp": "2025-01-10T01:41:40.408205+00:00",
"rrid": "RRID:SAMN22562810",
"schema_version": "16",
"sex": "female",
"status": "released",
"submitted_by": {
"@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
"title": "Ying Sun"
},
"submitter_comment": "Meta-data was obtained directly from PANC-DB",
"summary": "Hispanic female",
"taxa": "Homo sapiens",
"url": "https://hpap.pmacs.upenn.edu/explore/donor/donor-summary/HPAP-099",
"uuid": "6dc29c31-8b60-4350-aec4-1d0b81c471f1",
"virtual": false
}