PKBDO3039VAUN

{
    "@context": "/terms/",
    "@id": "/human-donors/PKBDO3039VAUN/",
    "@type": [
        "HumanDonor",
        "Donor",
        "Item"
    ],
    "aab_count": 0,
    "aab_gada": false,
    "aab_gada_assay": [],
    "aab_gada_value": 0,
    "aab_ia2": false,
    "aab_ia2_assay": [],
    "aab_ia2_value": 0,
    "aab_iaa": false,
    "aab_iaa_assay": [],
    "aab_iaa_value": -0.002,
    "aab_positive": false,
    "aab_summary": "none positive",
    "aab_tested": true,
    "aab_znt8": false,
    "aab_znt8_assay": [],
    "aab_znt8_value": -0.002,
    "accession": "PKBDO3039VAUN",
    "age": 48,
    "age_group": "40-64",
    "aliases": [
        "klaus-kaestner:HPAP-085"
    ],
    "audit": {
        "WARNING": [
            {
                "category": "missing tier 1 field",
                "detail": "Human donor [PKBDO3039VAUN](/human-donors/PKBDO3039VAUN/) is missing tier 1 field `sex`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier1_fields",
                "path": "/human-donors/PKBDO3039VAUN/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBDO3039VAUN](/human-donors/PKBDO3039VAUN/) is missing tier 2 field `glucose_loweing_theraphy`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier2_fields",
                "path": "/human-donors/PKBDO3039VAUN/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO3039VAUN](/human-donors/PKBDO3039VAUN/) is missing tier 3 field `phenotypic_features`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier3_fields",
                "path": "/human-donors/PKBDO3039VAUN/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO3039VAUN](/human-donors/PKBDO3039VAUN/) is missing tier 3 field `documents`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier3_fields",
                "path": "/human-donors/PKBDO3039VAUN/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO3039VAUN](/human-donors/PKBDO3039VAUN/) is missing tier 3 field `related_donors`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_tier3_fields",
                "path": "/human-donors/PKBDO3039VAUN/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U01DK123594/",
        "name": "U01DK123594",
        "title": "THE HUMAN PANCREAS ANALYSIS PROGRAM FOR TYPE 2 DIABETES"
    },
    "biosamples": [
        "/primary-islet/PKBSM1026HYOH/",
        "/primary-cells/PKBSM3559NMPC/"
    ],
    "bmi": 39.78,
    "c_peptide": 7.2,
    "cause_of_death": "Cerebrovascular/Stroke",
    "center_donor_id": "SAMN19842614",
    "collections": [
        "HPAP"
    ],
    "creation_timestamp": "2024-10-14T22:34:41.481301+00:00",
    "data_available": [
        {
            "dataset": "Genotyping",
            "dataset_link": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs002465.v1.p1",
            "dataset_tissue": "-"
        },
        {
            "dataset": "HLA_typing",
            "dataset_link": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs002465.v1.p1",
            "dataset_tissue": "-"
        },
        {
            "dataset": "RNAseq",
            "dataset_link": "https://hpap.pmacs.upenn.edu",
            "dataset_tissue": "Islet"
        },
        {
            "dataset": "scRNAseq",
            "dataset_link": "https://hpap.pmacs.upenn.edu",
            "dataset_tissue": "Islet"
        },
        {
            "dataset": "snATACseq",
            "dataset_link": "https://hpap.pmacs.upenn.edu",
            "dataset_tissue": "Islet"
        },
        {
            "dataset": "Function",
            "dataset_link": "https://hpap.pmacs.upenn.edu",
            "dataset_tissue": "Islet"
        },
        {
            "dataset": "CyTof",
            "dataset_link": "https://hpap.pmacs.upenn.edu",
            "dataset_tissue": "Islet"
        },
        {
            "dataset": "histology",
            "dataset_link": "https://hpap.pmacs.upenn.edu",
            "dataset_tissue": "Pancreas"
        },
        {
            "dataset": "imaging_mass_spec",
            "dataset_link": "https://hpap.pmacs.upenn.edu",
            "dataset_tissue": "Pancreas"
        },
        {
            "dataset": "histology",
            "dataset_link": "https://hpap.pmacs.upenn.edu",
            "dataset_tissue": "Spleen"
        },
        {
            "dataset": "histology",
            "dataset_link": "https://hpap.pmacs.upenn.edu",
            "dataset_tissue": "Lymph"
        }
    ],
    "data_available_datasets": [
        "Genotyping",
        "HLA_typing",
        "RNAseq",
        "scRNAseq",
        "snATACseq",
        "Function",
        "CyTof",
        "Histology",
        "imaging_mass_spec"
    ],
    "data_available_keys": [
        "Genotyping|unspecified",
        "HLA_typing|unspecified",
        "RNAseq|Islet",
        "scRNAseq|Islet",
        "snATACseq|Islet",
        "Function|Islet",
        "CyTof|Islet",
        "Histology|Pancreas",
        "imaging_mass_spec|Pancreas",
        "Histology|Spleen",
        "Histology|Lymph"
    ],
    "data_available_tissues": [
        "unspecified",
        "Islet",
        "Pancreas",
        "Spleen",
        "Lymph"
    ],
    "dbxrefs": [
        "PANC-DB:HPAP-085"
    ],
    "derived_diabetes_status": "Diabetes",
    "description": "Human pancreas donor SAMN19842614 in the HPAP database",
    "diabetes_duration": "6-10",
    "diabetes_status": [
        "/phenotype-terms/MONDO_0005148/"
    ],
    "diabetes_status_description": "Type 2 Diabetes",
    "dominant_genetic_ancestry": "European",
    "donation_type": "Donation after brain death",
    "ethnicities": [
        "White"
    ],
    "family_history_of_diabetes": "TRUE",
    "family_history_of_diabetes_relationship": [
        "Mother"
    ],
    "gender": "Female",
    "genetic_ethnicities": [
        {
            "ethnicity": "European",
            "percentage": 96
        },
        {
            "ethnicity": "Admixed-American",
            "percentage": 3
        },
        {
            "ethnicity": "African",
            "percentage": 1
        }
    ],
    "genetic_sex": "Female",
    "hba1c": 7.3,
    "hla_status": "DR4/X",
    "hla_typing": [
        "A,3-11,RT-PCR",
        "B,60-44,RT-PCR",
        "Bw4,1-1,RT-PCR",
        "Bw6,1-1,RT-PCR",
        "C,10-05,RT-PCR",
        "DPB1,04:01-10:01,RT-PCR",
        "DQA1,01-03,RT-PCR",
        "DQB1,8-5,RT-PCR",
        "DR,4-16,RT-PCR",
        "DR51,51-0,RT-PCR",
        "DR52,0-0,RT-PCR",
        "DR53,53-0,RT-PCR"
    ],
    "hospital_stay": 111,
    "human_donor_identifiers": [
        "PANC-DB:HPAP-085"
    ],
    "lab": {
        "@id": "/labs/klaus-kaestner/"
    },
    "label_hba1c_discordant": false,
    "living_donor": false,
    "other_therapy": [
        "Oral meds,Insulin"
    ],
    "other_tissues_available": [
        "/sample-terms/UBERON_0002113/",
        "/sample-terms/UBERON_0002107/",
        "/sample-terms/UBERON_0002048/",
        "/sample-terms/UBERON_0001264/",
        "/sample-terms/UBERON_0000948/"
    ],
    "pancreas_tissue_available": true,
    "pediatric": false,
    "publication_identifiers": [
        "PMID:31127054",
        "PMID:36206763"
    ],
    "release_timestamp": "2025-01-10T01:41:35.020784+00:00",
    "rrid": "RRID:SAMN19842614",
    "schema_version": "23",
    "sex_discordant": false,
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "submitter_comment": "Meta-data was obtained directly from PANC-DB",
    "summary": "PKBDO3039VAUN",
    "t1d_stage": "No sufficient information to derive",
    "taxa": "Homo sapiens",
    "tier1_complete": true,
    "url": "https://hpap.pmacs.upenn.edu/explore/donor/donor-summary/HPAP-085",
    "uuid": "03f63528-2eda-49e8-a408-2ac45662b2bb",
    "virtual": false
}