PKBDO2080FGND

{
    "@context": "/terms/",
    "@id": "/human-donors/PKBDO2080FGND/",
    "@type": [
        "HumanDonor",
        "Donor",
        "Item"
    ],
    "accession": "PKBDO2080FGND",
    "age": 54,
    "aliases": [
        "joyce-niland:SAMN08768799"
    ],
    "audit": {
        "WARNING": [
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 2 field `diabetes_status_hba1c`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 2 field `glucose_loweing_theraphy`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            },
            {
                "category": "missing tier 2 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 2 field `donation_type`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_desired_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 3 field `phenotypic_features`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_optional_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 3 field `family_history_of_diabetes`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_optional_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 3 field `family_history_of_diabetes_relationship`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_optional_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 3 field `biological_sex`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_optional_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 3 field `diabetes_duration`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_optional_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 3 field `c_peptide`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_optional_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 3 field `aab_gada`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_optional_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 3 field `aab_gada_value`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_optional_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 3 field `aab_ia2`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_optional_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 3 field `aab_ia2_value`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_optional_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 3 field `aab_znt8`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_optional_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 3 field `aab_znt8_value`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_optional_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            },
            {
                "category": "missing tier 3 field",
                "detail": "Human donor [PKBDO2080FGND](/human-donors/PKBDO2080FGND/) is missing tier 3 field `documents`.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_optional_fields",
                "path": "/human-donors/PKBDO2080FGND/"
            }
        ]
    },
    "award": {
        "@id": "/awards/U24DK098085/"
    },
    "bmi": 35.6,
    "cause_of_death": "Cerebrovascular/stroke",
    "center_donor_id": "SAMN08768799",
    "collections": [
        "IIDP"
    ],
    "creation_timestamp": "2024-12-03T20:48:39.456433+00:00",
    "data_available": [
        {
            "dataset": "scRNAseq",
            "dataset_link": "https://www.ncbi.nlm.nih.gov/geo/",
            "dataset_tissue": "Islet"
        }
    ],
    "dbxrefs": [
        "GEO:SAMN08768799"
    ],
    "description": "Human donor SAMN08768799 in the IIDP database",
    "diabetes_status": [],
    "diabetes_status_description": "non-diabetic",
    "ethnicities": [
        "Caucasian"
    ],
    "genetic_ethnicities": [
        {
            "ethnicity": "European",
            "percentage": 100
        }
    ],
    "hba1c": 5.1,
    "hla_typing": [
        "A,1-2,OPO",
        "B,7-44,OPO",
        "C,05-07,OPO",
        "Bw4,1-.,OPO",
        "Bw6,1-.,OPO",
        "DR,7-15,OPO",
        "DR51,1-.,OPO",
        "DR52,0-.,OPO",
        "DR52,1-.,OPO",
        "DQ,2-6,OPO"
    ],
    "hospital_stay": 101,
    "human_donor_identifiers": [
        "IIDP:SAMN08768799",
        "HIPP:HIPP93"
    ],
    "lab": {
        "@id": "/labs/joyce-niland/",
        "title": "Joyce Niland, CoH"
    },
    "living_donor": false,
    "notes": "Cohort_ID:SAMN08768799; other disease states: spinal cancer",
    "other_tissues_available": [],
    "pancreas_tissue_available": false,
    "publication_identifiers": [
        "PMID:19366778",
        "PMID:22889479",
        "PMID:20447343"
    ],
    "release_timestamp": "2025-01-10T01:42:46.808725+00:00",
    "rrid": "RRID:SAMN08768799",
    "schema_version": "16",
    "sex": "male",
    "status": "released",
    "submitted_by": {
        "@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
        "title": "Ying Sun"
    },
    "submitter_comment": "Meta-data was obtained directly from IIDP",
    "summary": "Caucasian male",
    "taxa": "Homo sapiens",
    "url": "https://iidp.coh.org/Resources-Offered/Research-Data-Repository",
    "uuid": "5d21cbe8-064e-4498-bcfc-bfac75fcac56",
    "virtual": false
}