PKBDO1229PGZJ
{
"@context": "/terms/",
"@id": "/human-donors/PKBDO1229PGZJ/",
"@type": [
"HumanDonor",
"Donor",
"Item"
],
"accession": "PKBDO1229PGZJ",
"age": 54,
"aliases": [
"joyce-niland:SAMN29494287"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "upgrade failure",
"detail": "NameError(\"name 'ethnicities_status_mapping' is not defined\") upgrading from '16' to '17'",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_schema",
"path": "/human-donors/PKBDO1229PGZJ/"
}
],
"WARNING": [
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 2 field `glucose_loweing_theraphy`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier2_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 2 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 2 field `donation_type`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier2_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `phenotypic_features`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `family_history_of_diabetes`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `family_history_of_diabetes_relationship`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `diabetes_duration`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `c_peptide`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `aab_gada`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `aab_gada_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `aab_gada_value`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `aab_ia2`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `aab_ia2_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `aab_ia2_value`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `aab_iaa`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `aab_iaa_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `aab_iaa_value`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `aab_znt8`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `aab_znt8_assay`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `aab_znt8_value`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `other_theraphy`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `documents`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `t1d_stage`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `data_available`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
},
{
"category": "missing tier 3 field",
"detail": "Human donor [PKBDO1229PGZJ](/human-donors/PKBDO1229PGZJ/) is missing tier 3 field `related_donors`.",
"level": 40,
"level_name": "WARNING",
"name": "audit_tier3_fields",
"path": "/human-donors/PKBDO1229PGZJ/"
}
]
},
"award": {
"@id": "/awards/U24DK098085/"
},
"biological_sex": "male",
"bmi": 30.8,
"cause_of_death": "Cerebrovascular/stroke",
"center_donor_id": "SAMN29494287",
"collections": [
"IIDP"
],
"creation_timestamp": "2024-12-03T20:26:11.743413+00:00",
"dbxrefs": [
"GEO:SAMN29494287"
],
"derived_diabetes_status": "Normal",
"description": "Human donor SAMN29494287 in the IIDP database",
"diabetes_status": [],
"diabetes_status_description": "control without diabetes",
"ethnicities": [
"Caucasian"
],
"genetic_ethnicities": [
{
"ethnicity": "European",
"percentage": 99
},
{
"ethnicity": "Admixed-American",
"percentage": 1
}
],
"hba1c": 5.1,
"hla_typing": [
"A,1-31,OPO",
"B,7-62,OPO",
"C,06-07,OPO",
"Bw4,0-.,OPO",
"Bw6,0-.,OPO",
"DR,4-15,OPO",
"DR51,1-.,OPO",
"DR52,0-.,OPO",
"DR53,1-.,OPO",
"DQ,6-8,OPO"
],
"hospital_stay": 188,
"human_donor_identifiers": [
"IIDP:SAMN29494287"
],
"lab": {
"@id": "/labs/joyce-niland/",
"title": "Joyce Niland, CoH"
},
"living_donor": false,
"notes": "Cohort_ID:SAMN29494287; other disease states: hypertension",
"other_tissues_available": [],
"pancreas_tissue_available": false,
"publication_identifiers": [
"PMID:19366778",
"PMID:22889479",
"PMID:20447343"
],
"release_timestamp": "2025-01-10T01:41:00.411810+00:00",
"rrid": "RRID:SAMN29494287",
"schema_version": "16",
"sex": "male",
"status": "released",
"submitted_by": {
"@id": "/users/5e3038c4-baa5-4589-b3d8-ad2fe634e826/",
"title": "Ying Sun"
},
"submitter_comment": "Meta-data was obtained directly from IIDP",
"summary": "Caucasian male",
"taxa": "Homo sapiens",
"url": "https://iidp.coh.org/Resources-Offered/Research-Data-Repository",
"uuid": "2248a8ad-8f8c-473e-ba08-983c5f668697",
"virtual": false
}
Supported by National Institutes of Health (NIH) grants U24 DK138515, U24 DK138512
Supplemental funds from the NIH Office of Data Science Strategies
Supplemental funds from the NIH Office of Data Science Strategies