audit_item_schema

Pankbase connects and integrates pancreas and islet datasets generated through international tissue mapping efforts.

U24DK138512

Ying Sun

A Data and Administrative Coordinating Center for the PanKbase Consortium

Kyle Gaulton

R01-DK114650-01A1

The Gaulton lab is a biomedical research group in the Department of Pediatrics and the UCSD Pediatric Diabetes Research Center at the University of California, San Diego School of Medicine in La Jolla CA.

kyle-gaulton

Kyle Gaulton, UCSD

DK138515

Pankbase DK138515 Grant

UC4DK112232

Integrated Program for Human Pancreas Procurement and Analysis

U01DK123594

THE HUMAN PANCREAS ANALYSIS PROGRAM FOR TYPE 2 DIABETES

U24DK098085

Integrated Islet Distribution Program (U24)

Prodo

Funding for Prodo Laboratories Inc.

3-SRA-2023-1417-S-B

A World without Type 1 Diabetes 3-SRA-2023-1417-S-B

5-SRA-2021-1149-S-B

A World without Type 1 Diabetes 5-SRA-2021-1149-S-B

Diabetes risk variants affecting transcription factor-regulated cellular networks

UC4DK112217

PENN INTEGRATED HUMAN PANCREAS PROCUREMENT AND ANALYSIS PROGRAM

U24DK138512-DK138515

A Data and Administrative Coordinating Center for the PanKbase Consortium U24DK138512-DK138515

help

Parul Kudtarkar

Help & Documentation

mark-atkinson

Mark Atkinson, UFHealth

pankbase-consortium_debug

prodo-laboratories

Prodo Laboratories, PRODO

pankbase-consortium

patrick-macdonald

Patrick Macdonald, CBell

steven-parker

Stephen Parker, UMICH

klaus-kaestner

Klaus Kaestner, UPenn

joyce-niland

Joyce Niland, CoH

scprocessing_v3pt3

Single cell expression map of pancreatic islets using data from HPAP, IIDP and Prodo (V3 Freeze)

scprocessing_v1

Single cell expression map of pancreatic islets using data from HPAP, IIDP and Prodo (V1 Freeze)

pipelines

sn-scrnaseq-pipeline_hv

sc/snRNA-seq processing pipeline

pca_analysismethods

PCA Analysis Methods

snatac-processing-pipeline-pk

snATAC processing pipeline

beta-cell-line-metadata

Human beta cell line meta-data

data-processing-standards

Single cell RNA-seq data processing standards

method

Method

news

PanKbase Data Library News

about-pankbase

Program Information

audit_item_status

accessing-unreleased-data

Accessing Unreleased Data

policies

PanKbase Policies

single-cell-atac-metadata

Metadata Collected for Single-Cell ATAC-Seq (snATAC-seq)

single-cell-atac-data

snATAC-seq data standards

primary-cell-biosample

Primary Cell Schema and Standards

file-formats

File format standards

bulk-rna-metadata

Bulk RNA-seq meta-data standards

bulk-rna-seq-data-standards

Bulk RNA-seq data standards

bulk-rna-data

islet-biosample

Islet biosample schema and standards

islet-function-experiment

Islet function experiment meta-data

human-donor

Human donor schema and standards

sequence-based-assays-metadata-standards

Sequence Based Assay schema and standards

standards

Metadata and Data Standards

islet-dynamic-perifusion

Islet dynamic perifusion data processing

user-guide

PanKbase Data Library User Guide