RNAseq GTEx pipeline bamsync optional step

released

Title

Description

This utility adds the following information that is lost when realigning BAM files:Copies the "read fails platform/vendor quality checks" flag (0x200) from the original BAM;Adds a read group ID to each read based on the read ID, in the format RG:Z:xxxxx.x

Step Label

bamsync-optional-step

Analysis Step Types

file format conversion

Workflow

PKBWF6231IPHV

Input Content Types

alignments

Output Content Types

alignments

Aliases

kyle-gaulton:workflow_RNAseqPipelineForGTExConsortium_step3_syncBAMs

RNAseq GTEx pipeline bamsync optional step

Attribution