{
"@context": "/terms/",
"@id": "/analysis-sets/PKBDS8427QUCQ/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "PKBDS8427QUCQ",
"aliases": [
"pankbase-consortium:embedding_islet_scRNA"
],
"assay_titles": [
"RNA-seq",
"scRNA-seq"
],
"audit": {
"ERROR": [
{
"category": "unexpected input file set",
"detail": "Analysis set [PKBDS8427QUCQ](/analysis-sets/PKBDS8427QUCQ/) links to file set(s): [PKBDS7099PEMZ](/measurement-sets/PKBDS7099PEMZ/), [PKBDS3153XUGC](/measurement-sets/PKBDS3153XUGC/), [PKBDS3261BPUJ](/measurement-sets/PKBDS3261BPUJ/), [PKBDS2439BCDQ](/measurement-sets/PKBDS2439BCDQ/), [PKBDS3071OZGF](/measurement-sets/PKBDS3071OZGF/), [PKBDS0271WNTB](/measurement-sets/PKBDS0271WNTB/), [PKBDS0262OOHD](/measurement-sets/PKBDS0262OOHD/), [PKBDS3413FGPC](/measurement-sets/PKBDS3413FGPC/), [PKBDS3160HPHM](/measurement-sets/PKBDS3160HPHM/), [PKBDS1940FHZN](/measurement-sets/PKBDS1940FHZN/), [PKBDS5492TDAR](/measurement-sets/PKBDS5492TDAR/), [PKBDS6101VPLW](/measurement-sets/PKBDS6101VPLW/), [PKBDS3378ODIB](/measurement-sets/PKBDS3378ODIB/), [PKBDS9953BYGN](/measurement-sets/PKBDS9953BYGN/), [PKBDS7148VGQW](/measurement-sets/PKBDS7148VGQW/), [PKBDS0587TFYC](/measurement-sets/PKBDS0587TFYC/), [PKBDS5669BNNL](/measurement-sets/PKBDS5669BNNL/), [PKBDS3826KZAO](/measurement-sets/PKBDS3826KZAO/), [PKBDS7134ZAQG](/measurement-sets/PKBDS7134ZAQG/), [PKBDS2536RGBZ](/measurement-sets/PKBDS2536RGBZ/), [PKBDS9268STQT](/measurement-sets/PKBDS9268STQT/), [PKBDS8877LRPI](/measurement-sets/PKBDS8877LRPI/), [PKBDS1863REQR](/measurement-sets/PKBDS1863REQR/), [PKBDS1154WWKJ](/measurement-sets/PKBDS1154WWKJ/), [PKBDS6500WUBN](/measurement-sets/PKBDS6500WUBN/), [PKBDS8015CXOR](/measurement-sets/PKBDS8015CXOR/), [PKBDS5477URJC](/measurement-sets/PKBDS5477URJC/), [PKBDS0097TECC](/measurement-sets/PKBDS0097TECC/), [PKBDS1106FEEW](/measurement-sets/PKBDS1106FEEW/), [PKBDS2029RIDV](/measurement-sets/PKBDS2029RIDV/), [PKBDS5449NYGY](/measurement-sets/PKBDS5449NYGY/), [PKBDS1970HCXV](/measurement-sets/PKBDS1970HCXV/), [PKBDS1500HZCP](/measurement-sets/PKBDS1500HZCP/), [PKBDS8795JYDP](/measurement-sets/PKBDS8795JYDP/), [PKBDS0358VWKW](/measurement-sets/PKBDS0358VWKW/), [PKBDS9448DBLA](/measurement-sets/PKBDS9448DBLA/), [PKBDS9828LUVV](/measurement-sets/PKBDS9828LUVV/), [PKBDS6452TPRC](/measurement-sets/PKBDS6452TPRC/), [PKBDS6578YHUL](/measurement-sets/PKBDS6578YHUL/), [PKBDS9833UWMS](/measurement-sets/PKBDS9833UWMS/), [PKBDS0437ICAT](/measurement-sets/PKBDS0437ICAT/), [PKBDS4714ZULD](/measurement-sets/PKBDS4714ZULD/), [PKBDS4071QDYM](/measurement-sets/PKBDS4071QDYM/), [PKBDS0947BJKB](/measurement-sets/PKBDS0947BJKB/), [PKBDS3884VTMK](/measurement-sets/PKBDS3884VTMK/), [PKBDS4292WWQK](/measurement-sets/PKBDS4292WWQK/), [PKBDS2200LUWZ](/measurement-sets/PKBDS2200LUWZ/), [PKBDS5485BFAN](/measurement-sets/PKBDS5485BFAN/), [PKBDS0357JMLH](/measurement-sets/PKBDS0357JMLH/), [PKBDS7826WTVX](/measurement-sets/PKBDS7826WTVX/), [PKBDS3789CPUA](/measurement-sets/PKBDS3789CPUA/), [PKBDS3070RLGN](/measurement-sets/PKBDS3070RLGN/), [PKBDS7661QYXR](/measurement-sets/PKBDS7661QYXR/), [PKBDS8930EKQA](/measurement-sets/PKBDS8930EKQA/), [PKBDS0360ASXI](/measurement-sets/PKBDS0360ASXI/), [PKBDS2581GPME](/measurement-sets/PKBDS2581GPME/), [PKBDS0581UZXU](/measurement-sets/PKBDS0581UZXU/), [PKBDS9988KCBY](/measurement-sets/PKBDS9988KCBY/), [PKBDS2484DPUO](/measurement-sets/PKBDS2484DPUO/), [PKBDS4045VIXV](/measurement-sets/PKBDS4045VIXV/), [PKBDS1298BBKQ](/measurement-sets/PKBDS1298BBKQ/), [PKBDS9353VZUV](/measurement-sets/PKBDS9353VZUV/), [PKBDS3708AAZQ](/measurement-sets/PKBDS3708AAZQ/), [PKBDS7961HCYS](/measurement-sets/PKBDS7961HCYS/), [PKBDS6293ZIMN](/measurement-sets/PKBDS6293ZIMN/), [PKBDS6581ITMO](/measurement-sets/PKBDS6581ITMO/), [PKBDS0739HXYT](/measurement-sets/PKBDS0739HXYT/), [PKBDS6515IJML](/measurement-sets/PKBDS6515IJML/), [PKBDS0113GQBD](/measurement-sets/PKBDS0113GQBD/), [PKBDS9638HUGC](/measurement-sets/PKBDS9638HUGC/), [PKBDS0880VJEZ](/measurement-sets/PKBDS0880VJEZ/), [PKBDS5508QJQA](/measurement-sets/PKBDS5508QJQA/), [PKBDS3201MNUS](/measurement-sets/PKBDS3201MNUS/), [PKBDS5188RZLT](/measurement-sets/PKBDS5188RZLT/), [PKBDS3032KUYE](/measurement-sets/PKBDS3032KUYE/), [PKBDS7052WFAQ](/measurement-sets/PKBDS7052WFAQ/), [PKBDS9508RYQS](/measurement-sets/PKBDS9508RYQS/), [PKBDS3547CNRW](/measurement-sets/PKBDS3547CNRW/), [PKBDS3289WFFG](/measurement-sets/PKBDS3289WFFG/), [PKBDS2940VQES](/measurement-sets/PKBDS2940VQES/), [PKBDS7490PFCD](/measurement-sets/PKBDS7490PFCD/), [PKBDS0026NSRN](/measurement-sets/PKBDS0026NSRN/), [PKBDS7732EPAC](/measurement-sets/PKBDS7732EPAC/), [PKBDS2680DJAS](/measurement-sets/PKBDS2680DJAS/), [PKBDS7415WBAC](/measurement-sets/PKBDS7415WBAC/), [PKBDS9711RZYJ](/measurement-sets/PKBDS9711RZYJ/), [PKBDS1418ZCDC](/measurement-sets/PKBDS1418ZCDC/), [PKBDS4770NDIK](/measurement-sets/PKBDS4770NDIK/), [PKBDS9393VGQG](/measurement-sets/PKBDS9393VGQG/), [PKBDS1803EKYX](/measurement-sets/PKBDS1803EKYX/), [PKBDS0026SOHF](/measurement-sets/PKBDS0026SOHF/), [PKBDS2043MQTD](/measurement-sets/PKBDS2043MQTD/), [PKBDS7322PKKO](/measurement-sets/PKBDS7322PKKO/), [PKBDS1888NOHH](/measurement-sets/PKBDS1888NOHH/), [PKBDS4682EIBW](/measurement-sets/PKBDS4682EIBW/), [PKBDS1819TMOQ](/measurement-sets/PKBDS1819TMOQ/), [PKBDS5812RCQW](/measurement-sets/PKBDS5812RCQW/), [PKBDS9663YTET](/measurement-sets/PKBDS9663YTET/), [PKBDS6276JJRU](/measurement-sets/PKBDS6276JJRU/), [PKBDS9071PZMR](/measurement-sets/PKBDS9071PZMR/), [PKBDS7830PYAC](/measurement-sets/PKBDS7830PYAC/), [PKBDS8095YXJY](/measurement-sets/PKBDS8095YXJY/), [PKBDS1765YFLE](/measurement-sets/PKBDS1765YFLE/), [PKBDS6514MMXU](/measurement-sets/PKBDS6514MMXU/), [PKBDS7553VRIH](/measurement-sets/PKBDS7553VRIH/), [PKBDS3462AUOK](/measurement-sets/PKBDS3462AUOK/), [PKBDS0508YMFY](/measurement-sets/PKBDS0508YMFY/), [PKBDS4072KSEL](/measurement-sets/PKBDS4072KSEL/), [PKBDS3308TVYY](/measurement-sets/PKBDS3308TVYY/), [PKBDS3874SYCA](/measurement-sets/PKBDS3874SYCA/), [PKBDS5758AKAX](/measurement-sets/PKBDS5758AKAX/), [PKBDS6866CAUP](/measurement-sets/PKBDS6866CAUP/), [PKBDS4129RMPN](/measurement-sets/PKBDS4129RMPN/), [PKBDS4167OESX](/measurement-sets/PKBDS4167OESX/), [PKBDS0056XJGA](/measurement-sets/PKBDS0056XJGA/), [PKBDS6003PUCC](/measurement-sets/PKBDS6003PUCC/), [PKBDS4652APUF](/measurement-sets/PKBDS4652APUF/), [PKBDS0806WSMD](/measurement-sets/PKBDS0806WSMD/), [PKBDS8061SBLT](/measurement-sets/PKBDS8061SBLT/), [PKBDS0444CJCF](/measurement-sets/PKBDS0444CJCF/), [PKBDS5965RDDI](/measurement-sets/PKBDS5965RDDI/), [PKBDS3503SNGY](/measurement-sets/PKBDS3503SNGY/), [PKBDS9925THPP](/measurement-sets/PKBDS9925THPP/), [PKBDS3678PPTK](/measurement-sets/PKBDS3678PPTK/), [PKBDS6010UCOO](/measurement-sets/PKBDS6010UCOO/), [PKBDS4872EQJY](/measurement-sets/PKBDS4872EQJY/), [PKBDS4978GIWI](/measurement-sets/PKBDS4978GIWI/), [PKBDS6336PTTC](/measurement-sets/PKBDS6336PTTC/), [PKBDS1889OAHJ](/measurement-sets/PKBDS1889OAHJ/), [PKBDS8187AJXW](/measurement-sets/PKBDS8187AJXW/), [PKBDS9902KTXS](/measurement-sets/PKBDS9902KTXS/), [PKBDS4059JNUH](/measurement-sets/PKBDS4059JNUH/), [PKBDS7644HQJW](/measurement-sets/PKBDS7644HQJW/), [PKBDS7794USDH](/measurement-sets/PKBDS7794USDH/), [PKBDS6724FRDP](/measurement-sets/PKBDS6724FRDP/), [PKBDS8822ZCUE](/measurement-sets/PKBDS8822ZCUE/), [PKBDS9947BDEB](/measurement-sets/PKBDS9947BDEB/), [PKBDS0607CAUQ](/measurement-sets/PKBDS0607CAUQ/), [PKBDS6245MQDS](/measurement-sets/PKBDS6245MQDS/), [PKBDS3237UJGZ](/measurement-sets/PKBDS3237UJGZ/), [PKBDS6606ZLUM](/measurement-sets/PKBDS6606ZLUM/), [PKBDS8032VNSJ](/measurement-sets/PKBDS8032VNSJ/), [PKBDS8041XICS](/measurement-sets/PKBDS8041XICS/), [PKBDS2282LAFB](/measurement-sets/PKBDS2282LAFB/), [PKBDS4602KXSR](/measurement-sets/PKBDS4602KXSR/), [PKBDS1306EHUV](/measurement-sets/PKBDS1306EHUV/), [PKBDS4484JZQQ](/measurement-sets/PKBDS4484JZQQ/), [PKBDS7962NZHF](/measurement-sets/PKBDS7962NZHF/), [PKBDS9839WUZL](/measurement-sets/PKBDS9839WUZL/), [PKBDS7911CBVJ](/measurement-sets/PKBDS7911CBVJ/), [PKBDS9149XOOL](/measurement-sets/PKBDS9149XOOL/) in `input_file_sets` that are not represented in the `derived_from` of the file sets of the files in this analysis. The analysis set input files are expected to belong to the input file sets.",
"level": 60,
"level_name": "ERROR",
"name": "audit_input_file_sets_derived_from",
"path": "/analysis-sets/PKBDS8427QUCQ/"
}
],
"WARNING": [
{
"category": "missing samples",
"detail": "Analysis set [PKBDS8427QUCQ](/analysis-sets/PKBDS8427QUCQ/) has `input_file_sets`, but no `samples`. With the exception of multiplexed data, analysis sets are expected to specify all the samples associated with its input file sets.",
"level": 40,
"level_name": "WARNING",
"name": "audit_analysis_set_samples",
"path": "/analysis-sets/PKBDS8427QUCQ/"
},
{
"category": "missing derived from",
"detail": "Analysis set [PKBDS8427QUCQ](/analysis-sets/PKBDS8427QUCQ/) links to file(s) [PKBFI4385LQRF](/matrix-files/PKBFI4385LQRF/) that have no `derived_from`. Files in an analysis set are expected to be derived from other files.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_file_sets_derived_from",
"path": "/analysis-sets/PKBDS8427QUCQ/"
}
]
},
"award": {
"@id": "/awards/U24DK138512/",
"component": "data coordination",
"contact_pi": {
"@id": "/users/c882b48a-ac92-4e7a-9510-daf9a1b1acaa/",
"title": "Stephen Parker"
},
"title": "Pankbase U24DK138512 Grant"
},
"control_for": [],
"creation_timestamp": "2025-01-10T09:49:08.924917+00:00",
"description": "Reference map of islet cell type-specific gene expression from 565388 cells derived from single cell RNA-seq assays of 132 donors from HPAP;IIDP and Prodo",
"file_set_type": "principal analysis",
"files": [
{
"@id": "/matrix-files/PKBFI4385LQRF/",
"accession": "PKBFI4385LQRF",
"aliases": [
"kyle-gaulton:embedding_islet_scRNA_matrixFile"
],
"content_type": "sparse gene count matrix",
"creation_timestamp": "2025-01-10T09:55:51.812920+00:00",
"file_format": "mtx",
"href": "/matrix-files/PKBFI4385LQRF/@@download/PKBFI4385LQRF.mtx"
}
],
"input_file_set_for": [],
"input_file_sets": [
{
"@id": "/measurement-sets/PKBDS7961HCYS/",
"accession": "PKBDS7961HCYS",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-019"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS2439BCDQ/",
"accession": "PKBDS2439BCDQ",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-020"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS3826KZAO/",
"accession": "PKBDS3826KZAO",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-021"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS3261BPUJ/",
"accession": "PKBDS3261BPUJ",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-022"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS7911CBVJ/",
"accession": "PKBDS7911CBVJ",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-024"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS4484JZQQ/",
"accession": "PKBDS4484JZQQ",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-028"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS8032VNSJ/",
"accession": "PKBDS8032VNSJ",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-029"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS9925THPP/",
"accession": "PKBDS9925THPP",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-032"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS3503SNGY/",
"accession": "PKBDS3503SNGY",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-035"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS1298BBKQ/",
"accession": "PKBDS1298BBKQ",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-036"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS5477URJC/",
"accession": "PKBDS5477URJC",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-037"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS2940VQES/",
"accession": "PKBDS2940VQES",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-038"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS3071OZGF/",
"accession": "PKBDS3071OZGF",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-039"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS0581UZXU/",
"accession": "PKBDS0581UZXU",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-040"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS0587TFYC/",
"accession": "PKBDS0587TFYC",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-042"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS0806WSMD/",
"accession": "PKBDS0806WSMD",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-043"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS5758AKAX/",
"accession": "PKBDS5758AKAX",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-044"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS0607CAUQ/",
"accession": "PKBDS0607CAUQ",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-045"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS6866CAUP/",
"accession": "PKBDS6866CAUP",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-047"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS3032KUYE/",
"accession": "PKBDS3032KUYE",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-049"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS0358VWKW/",
"accession": "PKBDS0358VWKW",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-050"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS6293ZIMN/",
"accession": "PKBDS6293ZIMN",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-051"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS5449NYGY/",
"accession": "PKBDS5449NYGY",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-052"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS1888NOHH/",
"accession": "PKBDS1888NOHH",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-053"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS4978GIWI/",
"accession": "PKBDS4978GIWI",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-054"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS4292WWQK/",
"accession": "PKBDS4292WWQK",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-055"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS9268STQT/",
"accession": "PKBDS9268STQT",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-056"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS5485BFAN/",
"accession": "PKBDS5485BFAN",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-058"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS3547CNRW/",
"accession": "PKBDS3547CNRW",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-059"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS8930EKQA/",
"accession": "PKBDS8930EKQA",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-061"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS3413FGPC/",
"accession": "PKBDS3413FGPC",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-063"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS0113GQBD/",
"accession": "PKBDS0113GQBD",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-064"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS8041XICS/",
"accession": "PKBDS8041XICS",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-065"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS8187AJXW/",
"accession": "PKBDS8187AJXW",
"aliases": [
"klaus-kaestner:pancreaticAlphaCell_MeasurementSet_RNAseq_HPAP-066"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS1803EKYX/",
"accession": "PKBDS1803EKYX",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-070"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS9071PZMR/",
"accession": "PKBDS9071PZMR",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-071"
],
"file_set_type": "experimental data"
},
{
"@id": "/measurement-sets/PKBDS7830PYAC/",
"accession": "PKBDS7830PYAC",
"aliases": [
"klaus-kaestner:scRNAseq_IsletCells_HPAP-072"
],
"file_set_type": "experimental data"
},
{
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