PKBDS8010LDJC
File Set Type
intermediate analysis
Submitter Comment
SRR27326992
Summary
intermediate analysis of scRNA-seq data
Description
Analysis set of scRNA-seq for islet biosample of human donor SAMN29494287 from IIDP with HTO (SRR27326992)
SamplesReport view
6 items
Sample Terms
Summary
PrimaryIslet
islet of Langerhans cell, male, Homo sapiens depleted of thapsigargin for 4 hours
PrimaryIslet
islet of Langerhans cell, male, Homo sapiens depleted of thapsigargin for 2 hours
PrimaryIslet
islet of Langerhans cell, male, Homo sapiens depleted of no treatment
PrimaryIslet
islet of Langerhans cell, male, Homo sapiens depleted of Dimethyl sulfoxide for 24 hours
PrimaryIslet
islet of Langerhans cell, male, Homo sapiens depleted of Dimethyl sulfoxide for 4 hours
PrimaryIslet
islet of Langerhans cell, male, Homo sapiens depleted of thapsigargin for 24 hours
Donors
1 item
MeasurementSet Input File Sets
1 item
Measurement Sets
Measured Samples
single-cell RNA sequencing assay (scRNA-seq)
islet of Langerhans cell, male, Homo sapiens depleted of no treatment
Files
25 items
bam
alignments
Pankbase Consortium, PanKbase
validated
mtx
sparse gene count matrix
Pankbase Consortium, PanKbase
validated
csv
QC metrics
Pankbase Consortium, PanKbase
validated
h5ad
sparse gene count matrix
Pankbase Consortium, PanKbase
validated
tsv
barcode to element mapping
Pankbase Consortium, PanKbase
validated
bam
alignments
Pankbase Consortium, PanKbase
validated
csv
sequence barcodes
Pankbase Consortium, PanKbase
validated
txt
QC metrics
Pankbase Consortium, PanKbase
validated
txt
QC metrics
Pankbase Consortium, PanKbase
validated
csv
QC metrics
Pankbase Consortium, PanKbase
validated
Attribution
Funding
Supported by National Institutes of Health (NIH) grants U24 DK138515, U24 DK138512
Supplemental funds from the NIH Office of Data Science Strategies
Supplemental funds from the NIH Office of Data Science Strategies
